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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagctttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatagctctgccactgagaattttgctcctttgttttctttttccctag

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 5'ss of exon 6
-ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtac-agctttgcttttaaaattgaaa--tggtgttgt-ttatggtt-tggtgaattgctatgt-attcatccatgtt---ggtcctaccatagctct--gccactgagaattttgctcctttgttttctttttccctag-------------------
  |||| ||| ||||||||||||||||| |||||  | |||||||| || || |  |  ||||||||||| ||||| ||| | ||||||||||| || ||||||  | ||  | || |  |||| ||   ||||  ||     ||||| |  || |||    ||  | |  ||||  |      |  | || |   |||      |  |    | |  | |    ||| || |  ||  ||                   
GGCATT-GGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGgtaagaactcagtttctgcaattaaagcctggttctgcaccttggttcttatgtattttgttgccaattttccacataaaaaattatgccttgattctcaatttcccatgtatatcttgcagcatttcctctgaccacagataatccattttatggcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 6
ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagctttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgtt-----ggtcctaccatagctctgcca-ctgagaattttgctcctttgttttctttttccctag----------------------------------------
  | ||||||||||||||||| || || |||      ||  |||| || || |  || |||||||| || ||||||||  |||||||||||||||| ||||||    ||| |   |  ||   |||      | |   |    ||     |  |    |  | |   ||||      |     |   ||  | |  || | | ||  |        ||||| | |||     | |                                        
GAAATTGGACATGACATATTCAGTGAAGTGGTTACAAACAGATGTGACCTTTGCACGCCGCTTTGAAGTATACCTGGATTATCCTTTCTTTGAGCACCAGgtaatattttcccactccaaagaaaaaaaaactatgcgtaacatg-cagctctcagcttgcttacttatgtgaaagagaaaaaatgttaattgtaacaacagggagctgaatcgtcttgttctttttgaaagttgttcaaaggttctgacttctatgcaaatttctaatgttcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G165631_T01 (Zea mays), 5'ss of exon 5
-ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagc-----tttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctat----gtattcatccatgttggt--cctaccat-agctctg--ccac-----tgagaattttgctcctttgttttctttttccctag-------------------
  |||| ||| |||||||||||||||||||||||  | || ||  | || || |  |  || |||||||| || |||||| ||||||||||||| || ||||||         | |  ||||  |||| |   || | | |||   | ||||    | |  ||     ||   | |||   |  |  | | |||| ||||  |  | ||     ||| |            | | |||||  |  ||||                   
GGCATT-GGATATGACATATTCTGTCAAATGGGAACCAACAAACATAACATTTGCTCACCGTTTTGATGTGTATCTGGACTATCCTTTCTTTGAACACCAGgtaatataggtatatatttttgcaattaa---ggagatctttgcagcttggctcctcgtaattacaatacagaaccagtataattacttcccattagctgcgttctacatgtttgaaagagcctgaatcatatcttcttaatttctagttatttcttgtacttgcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 6
-ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagctttgcttttaaa--attgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatagctctgccactgagaattttgctcctttgttttctttttccctag
 |||||  ||||||||||||||||| ||||||  | |||| | ||||||||| |  ||||| |||||||| || |||||  | ||||||||||| || |||||  |  | |  ||   |   |   || | |     |  || |     | | |||| |  |  || || |||    |||  |  ||  |   |||    |  |||                          
AACATT-AGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCACTTTTGCTCGTCGTTTTGATGTTTATCTGGATTACCCTTTCTTTGAACACCAGgtgaatttcttattggtactcaccaaattagaaaaatgaatagggctattagttgcaactt--tcttcaatgcacttccctct-taattgccccat---gtgttta-------------------------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 6
ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagctttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatagctctgccactgagaattttgctcctttgttttctttttccctag
|   ||||||||||||||||||||  |||||  | | ||  ||||  | ||    || || |||||| | ||||||||||| |||||||||||||| |||||    || |   |    |||  |  | |  |||   ||   ||     | |   || | |  ||  | ||  |  |||  | |||    ||| | |  |   |  | |  | ||| ||          
AGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTGCATTTTCACGGCGTTTTGATATTTACCTGGACCACCCTTTCTTTGAGCACCAGgt--gactattggtcaggaatgcaggttgaattgcccat---tt-----actttcatttgtgaattgaagt--gatctatta-agc----ccattaaatacact--ttccgtatttact----------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ15096 (Selaginella moellendorffii), 5'ss of exon 6
ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagctttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatagctctgccactgagaattttgctcctttgttttctttttccctag
|    ||||  | ||||| || || ||||||      || ||    | ||||       | ||||||| |||||||||| |||| |||||||||||||||||      |||  | |    ||| |   || |    |   | |||  | ||     || |                                                                     
ATCCCTGGAGTTTACATACTCCGTGAAATGGATCGAGACAAACACGAGTTTCCACAAGAGATTTGATGCCTACCTGGACTATCCATTCTTTGAGCATCAGgtttgttgttg--tctgtctttgtacaagtttaaactcctgcttgtggtatcttcgtgcag--------------------------------------------------------------------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ37593 (Selaginella moellendorffii), 5'ss of exon 6
ACATTTGGACATGACATATTCTGTCAAATGGGATTCTACCAATGTCACTTTCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagctttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatagctctgccactgagaattttgctcctttgttttctttttccctag
|    ||||  | ||||| || || ||||||      || ||    | ||||       | ||||||| |||||||||| |||| |||||||||||||||||      | |  | |    ||| |   || |    |   | |||  | ||     || |                                                                     
ATCCCTGGAGTTTACATACTCCGTGAAATGGATCGAGACAAACACGAGTTTCCACAAGAGATTTGATGCCTACCTGGACTATCCATTCTTTGAGCATCAGgtttgttgtcg--tctgtctttgtacaagtttaaactcctgcttgtggtatcttcgtgcag--------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193408884|gb|FK371138.1|FK371138
EST:     TCGGGCGTCGCTTTGATGTCTGCCTGGACCATCCTTTCTTTGAGCATCAG                         ATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACT
genomic: TCGGGCGTCGCTTTGATGTCTACCTGGACCATCCTTTCTTTGAGCATCAGgtacagcttt ... ttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACT