1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCTGCTTCTTATCCAGATCTTGAAGGAAGAACACCTGTTAATGCCCTTGTGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGGgtatgatcttatttactcttcaactctactgtttccattctaaacctatgtttgagcacttcaacctgaaaatttaaatgttgtagcttgaaattaaata...
species | Glycine max |
transcript | GLYMA05G30130.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGG GGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTTEST: gi|298188621|gb|HO035314.1|HO035314
genomic: TGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGGgtatgatctt ... ttttgtgaagGGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTT
EST: GGGAGCNNNNNNNTATGAAACCTGTTGCCAAACTTGATACACCTGTGGGG GGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTTEST: gi|27427411|gb|CA938931.1|CA938931
genomic: GGGAGC-AAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGGgtatgatctt ... ttttgtgaagGGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTT
EST: TGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGG GGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTTEST: gi|6725650|gb|AW310049.1|AW310049
genomic: TGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGGgtatgatctt ... ttttgtgaagGGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTT
EST: TGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGG GGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTT
genomic: TGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGGgtatgatctt ... ttttgtgaagGGAGATGTTTATCCTATAGAACCATCAGATGGTTTTACAGTCAATCAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTTCTTATCCAGATCTTGAAGGAAGAACACCTGTTAATGCCCTTGTGGGAGCAAAAAATATGAAACCTGTTGCCAAACTTGATACACCTGTGGGGgtatgatcttatttactcttcaactctactgtttccattctaaacctatgtttgagcacttcaacctgaaaatttaaatgttgtagcttgaaattaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa