Sequence
atgc intronic sequence ATGC exonic sequenceCTTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAGgtaagatctccttaataaacttttttattttgtatgcatattttttaagcttaagtaatcaggggccctaacctttttttctctggtctcttctctcctc...
Basic information
species | Glycine max |
transcript | GLYMA05G29870.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G29870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 5'ss of exon 6
CTTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAGgtaagatctccttaataaacttttttattttgtatgcatattttttaagcttaagtaatcaggggccctaacctttttttctctggtctcttctctcctc
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CTTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaatactatctgcttaatgaatagcagcagattacttcttgacacctgacactagtatctatcaacattttcag--------------------
upper sequence: GLYMA05G29870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G039263_T02 (Zea mays), 5'ss of exon 4
CTTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAGgtaagatctccttaataaacttttttattttgtatgcatattttttaagcttaagtaatcaggggccctaacctttttttctctggtctcttctctcctc
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CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAGgtaagagaatgctgtattttgagtaaatactggaagaatgctgtccctttccatgcttattgtcatactggtttgaaatattc--atctacactttcag-
upper sequence: GLYMA05G29870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G110626_T01 (Zea mays), 5'ss of exon 6
CTTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAGgtaagatctccttaataaacttttttattttgtatgcatatttt---ttaagcttaagtaatcaggggccctaaccttttttt--ctctggtctcttctctcctc
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CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAATTGGCAGTCAAGgtaagagaatgttat---attttgaggctctgagtaaatactggaagggatgcttccttattccatgattattttcatactttaatactcatatacactttcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254334339|gb|GR844124.1|GR844124EST: TTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAG GTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATG
genomic: TTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAGgtaagatctc ... tgacttttagGTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGCTATGCGTGAGGCTTGTAAATATGTAGAAGAAAAACTAGCTGTCAAGgtaagatctccttaataaacttttttattttgtatgcatattttttaagcttaagtaatcaggggccctaacctttttttctctggtctcttctctcctc
- - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcct