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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTTATCGGCTGGAACAATTGGACAATGGTGTTACTTCTGTTGGGTATATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagcttttctcagcttcatatgtgttttttttaatctaaaataataatgttttctcaattagagcattttttaaaagcagtgaaaaaataattagcag...

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29820.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G46390.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCTTTTATCGGCTGGAACAATTGGACAATGGTGTTACTTCTGTTGGGTATATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagcttttctcagcttcatatgt-gttttttttaatctaaaataataatgttttctcaattagagcattttttaaaagcagtgaaaaaataattagcag
|| | ||| ||| ||||| || | ||||||||       ||||| |||||||| || || ||||||||||||||  |||| |||||||| ||||| |||||||||| ||| |||  ||  ||  |     || | ||  |    |   |   |||| || | | | |  |   |   |  ||        |  ||  ||||
GTTTCTTACCGGTTGGAAAAAGTTGACAATGGAACAGTCTCTGTCGGGTATATTCGTCTAAAAGAGTTCAATGCGCTGGCTAGAAAAGATTTGGTGATTGgtaagccttt-tcatgttgttacatcaaagttatcaactttcggtcccatccttttatctacttgtgtttaaatagtacacatccttttcactatgtgcag

upper sequence: GLYMA05G29820.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 5
GTCTTTTATCGGCTGGAACAATTGGACAATGGTGTTACTTCTGTTGGGTATATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagcttttctcagcttcatatgtgttttttttaatctaaaataataatgttttctcaattagagcattttttaaaagcagtgaaaaaataattagcag-
||||||||| || ||||| || | || |||||||   |||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||||||||||||   ||  ||    | |   |  |  |    | | ||    | ||||    |  || ||||   ||||  || |     |  | | | | ||| ||  
GTCTTTTATAGGTTGGAAAAAATAGAGAATGGTGCAGCTTCTGTTGGGTATATGCGCCTGAAAGAGTTCAATGCATTGGCTAGAAAGGATTTGGTCATTGgtaaatgttcatcttacttagtcgaataatcaccattttactgcagtaatacgctg-cagttagcctatttaatatatctgttttacacaaacttaccatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258053|gb|BE346200.1|BE346200
EST:     TATACGCCTTAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTG                         CAATGAAGCGACTTCAAGACATGGGTGCCTCATATGTCATATTGGATCTCA
genomic: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagctttt ... gattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
EST: gi|26057180|gb|CA800094.1|CA800094
EST:     TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTG                         CAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
genomic: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagctttt ... gattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA