Sequence
atgc intronic sequence ATGC exonic sequenceGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGgtttagcattaatttacatagttcgatttctcttagtaacttgtcagtgatcattgatgtcatcctgttgctcctgttggcag
Basic information
species | Glycine max |
transcript | GLYMA05G28650.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G28650.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G14147.1 (Arabidopsis thaliana), 5'ss of exon 7
GCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGgt-----ttagcattaatttacatagttcgatttctcttagta--acttgtcagtgatcattgatgtcatcctgttgctcctgttggcag-----------
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GCAAGCGGATGAACTTGAAAACATACTAACCAAAAAATTTCTCAGATTCTTGTCCATGAGGGCAGAAGCTTTTCAAGTACTGAGGAGGAAGCCAGTGCAGgtagaccttcttattgattca-acacttaggtacttgtgagtgctactaggttttatctagaagttgcaatgcattccctcttttgtcgaacttctatttt
upper sequence: GLYMA05G28650.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0029g01310.t01 (Vitis vinifera), 5'ss of exon 6
GCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGgttta---gcattaatttacatagttcgatttctcttagtaactt---gtcagtgatcattgatgtcatcc-tgttgctc--ctgttggcag--------
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GCAGGCTGATGAACTAGAAAATATATTAACTAAGAAATTTCTTAGATTTTTGTCAATGAGGGCAGAAGCATTTCAAGTATTGAGGAGAAAACCAGTGCAGgtatgtatggtctcatctccatgagttggcatagaacatgcactttaaattcctgattctcagagtgattggtggtaatttgcctttagaaggaccttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298169680|gb|HO021040.1|HO021040EST: TGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAG GGATATGACATTAGCTTCCTTATA
genomic: TGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGgtttagcatt ... ctgttggcagGGATATGACATTAGCTTCCTTATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGgtttagcattaatttacatagttcgatttctcttagtaacttgtcagtgatcattgatgtcatcctgttgctcctgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA