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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgactaacttgaatatagaaaaaaagactatccacttgtattgtatgattattaatgcttggttactttctgtgcttacag

Basic information

species Glycine max
transcript GLYMA05G28570.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208241194|gb|GE039618.1|GE039618
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAAGATTT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATA-GATTT
EST: gi|207741475|gb|GD716743.1|GD716743
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|193411232|gb|FK376841.1|FK376841
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|207767866|gb|GD740278.1|GD740278
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|51344731|gb|CO985464.1|CO985464
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|21602019|gb|BQ612350.1|BQ612350
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|208062086|gb|GD855866.1|GD855866
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|193357340|gb|FK323224.1|FK323224
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|207719242|gb|GD699975.1|GD699975
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|208291302|gb|GE094552.1|GE094552
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|208204545|gb|GE007840.1|GE007840
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|193308221|gb|FK274888.1|FK274888
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|208193336|gb|GD990303.1|GD990303
EST:     GCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: GCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|193326241|gb|FK289322.1|FK289322
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAAGAACATAGCCATGAGTATAGATTTC
EST: gi|207780604|gb|GD751755.1|GD751755
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTATATCAAA
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTATATCAAA
EST: gi|207764284|gb|GD735313.1|GD735313
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAATTA
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAATTA
EST: gi|193365543|gb|FK332330.1|FK332330
EST:     ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTG                         GAGTGGTGGTTCTAAAATTATATCAAAAGAACATAGCCATGAGTATAGATT
genomic: ATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgacta ... gtgcttacagGAGTGGTGGTTCTAAA-TTATATCAAA-GAACATAGCCATGAGTATAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGGCTTGgtaatgactaacttgaatatagaaaaaaagactatccacttgtattgtatgattattaatgcttggttactttctgtgcttacag

- - - - - AGTGGA
- - - - - - - - - - - - - - - - - - -  AAGCAA