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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgattcatctagttttgttgatcctctcccccccctttttttcaatgattcattatctaattcctattctttttttggtttgtag

Basic information

species Glycine max
transcript GLYMA05G27940.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgattcatcta---gttttgttgatcctctcccccccctttttttcaatgattcattatctaattcctattcttttt-ttggtttgtag-----
|||| ||||||   || |||||||| |||||||| || || || |||||||| ||||||||||| |||||| || | | |||     |  |   |||   ||| |     ||| | ||  ||  ||||| |   |  ||  ||  ||||| |||| || | |     
CTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaatgatcccaacgcctctctgaatatcttcaaatacttatatttcatc-ttcatcactgatctcacataatttttgttgggttcttgcacag

upper sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 5
CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgattcatctagttttgttgatcctctcccccccctttttttcaatgattcattatctaattcctattcttttt-ttggtttgtag----------------------
| ||||||||||| || ||||| || |||||||| || |||||||| ||||||||||| || ||||||||| || |||  ||   ||   |  |   |    |||          ||||     |  |  || || |  |  ||||  || || | |                        
CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcattagtc--attgcatcaagaatagaacccaaagggagagcaatataggagaaattagttgccctggttttgattagtatcttactactcttggtgggttttgcag

upper sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 5'ss of exon 7
CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgattcatc-tagttttgttgatcctctccc----------------------ccccctttttttcaatgattcattatctaattcctattctttttttggtttgtag
| ||||||||||| || ||||| || |||||||| || || ||||| ||||||||||| || ||||||||| || |||  || | |  |     ||     |||                           |   ||||  |  ||||  |||| || |       || || | |||| ||
CATATATGTCATCCCCATGCCATATCGAGTTGATTTTGTCCGAAAAGGAAGAACCTGTTAAAAAGGAGgtacttaattagtcattgcatcaagaatagaaccccaaggggagaaatataggtgaaattagttgcctttcttttgttcagcatcttatgcactactcttgttggttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193392752|gb|FK359247.1|FK359247
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTACGAAAGTA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTT-CGAA-GT-
EST: gi|6951218|gb|AW423347.1|AW423347
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|7686619|gb|AW757276.1|AW757276
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|6566144|gb|AW233783.1|AW233783
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAA
EST: gi|254324956|gb|GR834381.1|GR834381
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|16996874|gb|BM086246.1|BM086246
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCA
EST: gi|13788824|gb|BG651415.1|BG651415
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTA
EST: gi|19271182|gb|BM887438.1|BM887438
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCC
EST: gi|5510348|gb|AI856673.1|AI856673
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAA
EST: gi|18848858|gb|BM567969.1|BM567969
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|14259170|gb|BG882078.1|BG882078
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|15813051|gb|BI785326.1|BI785326
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|209696899|gb|BW660464.1|BW660464
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|18730282|gb|BM525790.1|BM525790
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|12772559|gb|BG237550.1|BG237550
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGATATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|6666907|gb|AW278366.1|AW278366
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|6913074|gb|AW394604.1|AW394604
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|7029664|gb|AW459447.1|AW459447
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|21675575|gb|BQ627926.1|BQ627926
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|12496627|gb|BG047159.1|BG047159
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|15200901|gb|BI424589.1|BI424589
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|14990091|gb|BI315764.1|BI315764
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|26269293|gb|CA820356.1|CA820356
EST:     CACATAGAGGTTGATATTATCTGAAAAAAGAAGAACCTGTGAAGAAAGAG                         CCCGAGACTAAGTTAAGCAACAAG
genomic: CACATAGAG-TTGATATTATCTGAAAAA-GAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTA-GCAACAAG
EST: gi|10848260|gb|BF070791.1|BF070791
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|6455153|gb|AW185836.1|AW185836
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|7145918|gb|AW507840.1|AW507840
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAAGAG                         CCCGAGACTAAGTTAGCAACAGGCAAGAAATCC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCC
EST: gi|14990125|gb|BI315798.1|BI315798
EST:     CCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAAGA-GGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: CCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAA-GAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|7042501|gb|AW472395.1|AW472395
EST:     GCCACATAGAGTTGATATTATCTGANAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|193523766|gb|FK479985.1|FK479985
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|24136303|gb|BU926813.1|BU926813
EST:     GCCACATAAAGTTGATATTATCTGAAAAAGAAAAACCTGTGAAGAAAGAG                         CCCGAGACTAAGTTAGCAAC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAAC
EST: gi|22930393|gb|BU547532.1|BU547532
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|16347198|gb|BI972793.1|BI972793
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAAGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|213596920|gb|DB964127.1|DB964127
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|27426431|gb|CA937951.1|CA937951
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAAGAG                         CCCGAGACTAAGTTAGCAACCAGCAAGAAATCCCCAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCT
EST: gi|6483066|gb|AW202258.1|AW202258
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
EST: gi|10709618|gb|BF009342.1|BF009342
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAAGCA-GAAATCCCCAGCT
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAA-GCAAGAAATCCCAAGCT
EST: gi|5666572|gb|AI930608.1|AI930608
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAATGAG                         CCCGAGACTAAGTTAGCAACA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACA
EST: gi|5126866|gb|AI748602.1|AI748602
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAA
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAA
EST: gi|19269566|gb|BM885822.1|BM885822
EST:     GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAG                         CCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC
genomic: GCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgatt ... tggtttgtagCCCGAGACTAAGTTAGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGgtatttgattcatctagttttgttgatcctctcccccccctttttttcaatgattcattatctaattcctattctttttttggtttgtag

- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG