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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAgtaagtgcttacgatttcctttatttaaaaagttactgtttgattatattgtgcttatgttttgacactgttttcccaggcttttccaactttgggtggttctggtctgactatctggcctcacttggtgacttgtactgttgaacaaattttctattttgtattaacaacggaatgttcctttcag

Basic information

species Glycine max
transcript GLYMA05G27820.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAgtaagtgcttacgatttcctttatttaaaaagt-tactgtttgattatattg-----tgcttatgttttgacactgttttcccaggcttttccaactttgggtggttctggtctgactatctggcctcacttggtgacttgtactgttga-acaaattttctatt-ttgtattaacaacggaatgttcctttcag
|||||| | || ||||| || || |||||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||  |||   || | |||||||  |   | ||  |   ||| |  ||      ||||||   | |   |   | |||||||||||| | | |||| | || |  |||| || || |||| | ||| | |  || || || ||||   | |  | || | |   | |  | ||  |  |    | |||| ||
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggcttt-ctagctttagatgatg-tggtgtggctctctgac-tcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag

upper sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 3
ATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAgtaagtgcttacg------atttcctttatttaaaa-agtta-ctgtttgattatattgtgcttatgttttgacactgttttcccaggcttttccaactttgggtggttctggtctgactatctggcctcacttggtgacttgtactgttgaacaaat-tttctattttgtattaacaacgga-atgttcctttcag
|||||  | |  ||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||| || || ||||| || ||||||||    |         | |    | ||||| | |||||  |||   ||  |  ||| ||||| | ||| |||||||||||||||||   ||| ||||||||| ||| |||||| || ||||||||| | |||||||   | | |   | || || |||||  ||||||||||| |  ||  ||||||||||||
ATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCAgtaagtatccatttggcgtgtgtatgatgtttaatatagttaattgtaacatcctggtgttcttat-tcttgccactgttttcccaggctc--ccagctttgggtgattc-ggtctggctttctggcctc-catggtgacactttcagcacagcatatatttcttgtttgtattaaccattgatgtgttcctttcag