Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattggtattgcatcagaaacatttacagcgttgcctccttagtgtcattctgaaattgtaagagaatgttattctgtgtgtgcacgtaaataaa...
Basic information
species | Glycine max |
transcript | GLYMA05G26100.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g55260.1 (Oryza sativa), 5'ss of exon 6
GTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattggtattgcatcagaaacatttacagcgttgcctccttagtgtcattctgaaattgtaagagaatgttatt--ctgtgtgtgcacgtaaataaa
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ATACTTCACTGGTCTCTTGTCACCATGGAAAGGCATTTTACTTTTTGGTCCCCCAGGAACTGGGAAGgtttgtatatgcgcttgatt-gatatgttacttctgctaattggtcgagtacatctatggagtatagcaatactttcttaccttttcctatatttgaatgc-
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 6
GTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattggtattgcatcagaaacatttacagcgttgcctccttagtgtcattctgaaattgtaagagaatgttattctgtgtgtgcacgtaaataaa----
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ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCCCCAGGGACAGGAAAGgtttgtaaatgcat-acatatctaatatgc-taatcctgcagattta-tgtcatccatgtatcg-aggttttttcaattctttccttgtccttagctgtggcta
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G115766_T02 (Zea mays), 5'ss of exon 5
GTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattggtattgcatcagaaacatttacagcgttgcctccttagtgtcattctgaaattgtaagagaatgttattctgtgt-gtgcacgtaaataaa--
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ATACTTCACAGGTCTATTATCACCTTGGAAAGGCATATTACTGTTTGGTCCACCTGGAACAGGAAAGgtttgcacttcaa--gagtcattcacatttttttctctcgtttttgaaccatata-tgatattcctgttgtttgtagttctttattatgtatatttatatgtt
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 5'ss of exon 6
GTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattggtattgcatcagaaacatttacagcgttgcctcc-ttagtgtcattctgaaattgtaagagaatgtt-attctgtgtgtgcacgtaaataaa
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GTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCTCCAGGAACAGGAAAGgtttgtgttctacaagttttattattatttttggtgaaccttttatttattttatttttattttttaatgctttattcatgtttccttttcatctcatta--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13789838|gb|BG652429.1|BG652429EST: TATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAG ACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACNNNNNNNAAT
genomic: TATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattg ... attgttgtagACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGgtttgtattggtattgcatcagaaacatttacagcgttgcctccttagtgtcattctgaaattgtaagagaatgttattctgtgtgtgcacgtaaataaa
- - - - - - - - - - - CATGGA
- - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctt