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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGTCATTTTTGCTATATTTAACTGATGTTGAGGAAGGTGGGGAAACTATGTTTCCATTTGAGgtaaaaccaagtttgtcattatatactgtttcacatacttattttttttccatggtagttagcgcattattattctgcag

Basic information

species Glycine max
transcript GLYMA05G22270.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22270.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0129g00460.t01 (Vitis vinifera), 5'ss of exon 6
ATGGCGTCATTTTTGCTATATTTAACTGATGTTGAGGAAGGTGGGGAAACTATGTTTCCATTTGAGgtaaaaccaagtttgtcattatatactgtttcacatacttattttttt--tccatggtagttagcgcattattattctgcag-----
|| ||  |||| ||| | |||||  |||||||||| |||||||||||||| ||||| |||||||||||||     ||     |  | | |     | ||  |  | | ||||    || |   | || | | |||  |    ||  |      
ATTGCTACATTCTTGGTGTATTTGTCTGATGTTGAAGAAGGTGGGGAAACCATGTTCCCATTTGAGgtaaggatcagaacccctgtttgtttccctgcatttgttgaattttcaaatcaacttttgtca-ctcatcctaggccttgatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304582|gb|FG997926.1|FG997926
EST:     TATATTTAACTGATGTTGAGGAAGGTGGGGAAACTACGTTTCCATTTGAG                         AATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTA
genomic: TATATTTAACTGATGTTGAGGAAGGTGGGGAAACTATGTTTCCATTTGAGgtaaaaccaa ... tattctgcagAATGGCTTGAACATGGATGGTAACTATGGGTATGAGGACTGCATTGGTTTA