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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtattatatatttatattgtatggatgagattgaattactatatagaattactgttgctatggtaaatataaaatgctttttctaattttagtttt...

Basic information

species Glycine max
transcript GLYMA05G21910.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 9
GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtattatatatttatattgtatggatgagattgaattactatatagaattactgttgctatggtaaatataaaatgctttttctaattttagtttt--
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GACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGgtaggtactcagcatt-gcataggtccaagtacattccat-atcttattgacagttcttttccaggttaatcacatggaatttttgctagcactagactttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342055|gb|BI967650.1|BI967650
EST:     TTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG                         CCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG
genomic: TTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtatta ... atcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG
EST: gi|51337917|gb|CO981783.1|CO981783
EST:     TTTNNNTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG                         CCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG
genomic: TTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtatta ... atcttggcagCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTG