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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGGgttagttatattagaccattagtatctttagctgagtttacaggctggtgcagttgtttatcaaatgttactgattccgtaatccctacttttcatggggccattctttatgaag

Basic information

species Glycine max
transcript GLYMA05G21800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21800.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g40260.2 (Oryza sativa), 5'ss of exon 6
TGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGGgttagttatattagaccattag-tatctttagctgagtt--tacaggctggtgcagttgtttatcaaatgttactgattccgtaatcc--ctacttttcatggggccattctttatgaag
  | ||||| ||| | ||  |    |||||||  ||||||||||||||||||||||| || |||   || || ||||||||||||||  |||| |||||  |  | |||  |   ||||   | ||  | ||| ||   |||  |   | |  || |   |    ||||  ||| | | |  |    || || ||| |   |   |||   || |||
GAACGTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAGCTTTCGCTTTCACCTGAAAACTATTTGTTCCGGgtatgagaaattccaagcttagacctgttctgatgaattatgacaccccattacttttttgctttgcctgttgttgagttcatgttttgtcttctcttctttccggt-ttcaaaataaag

upper sequence: GLYMA05G21800.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G090715_T01 (Zea mays), 5'ss of exon 6
TGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAACTACATGTTTCGGgttagttatatta-gaccattagtatctttagctgagtttacaggctggtgcagttgtttatcaaatgttactgatt--ccgtaatccctacttttcatggggccattctttatgaag
  | |||||  | ||   | |    |||||||  ||||||||||||||||||||||| || |||  ||||||  |||||||||| ||  | || |||||  |  | |||| || |     | | ||||  | | || | |      |    |  ||| ||   || | |||  |   | |  |   |||| |   |    | |||||  ||||||
GAACGTCTCAAAGCTACATGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGACAGAAGCTCTCACTTACACCTGAAAATTATTTATTCCGGgtaggagaaattatgagctcatatgtatttaaatcacttgagataacatttgtttaatttgtctgttggtgctgtctactcatgttatgtactgtcttttcttcaattctgaatgaag