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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAAGCCTTCTTCACGATGATGTACTGGATGATGCAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttggttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcag

Basic information

species Glycine max
transcript GLYMA05G21570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21570.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g46450.2 (Oryza sativa), 5'ss of exon 6
GTGGCAAGCCTTCTTCACGATGATGTACTGGATGATGCAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttggttatatttacttaatacatac-tgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcag
|| ||||||||||| || |||||||||||||||||||| ||  |||| |||||  |  |||| |||||||   | ||||| || |||||||     ||||           |||  ||| |   | |  | | |     || | ||   | |   |  ||| ||   |||| |  |     |||        |                        
GTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGgtattgt--aagtcacacg--aactgc--atacgcagtgtactaagtgagtattagatactctcatcaagaacacacacatcaccttatacacacacaaaaggata------------------------

upper sequence: GLYMA05G21570.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G014508_T03 (Zea mays), 5'ss of exon 6
GTGGCAAGCCTTCTTCACGATGATGTACTGGATGATGCAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttggttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcag
|| ||||||||||| || |||||||| || |||||||| ||| |||| |||||| |  ||||||||||| |  | ||||| || ||||||| ||  |  |   || |  |  |    | | | || ||   | ||         |||||  |    | |     ||    ||  ||||| ||  || ||  |  ||  |                 
GTCGCAAGCCTTCTGCATGATGATGTTCTTGATGATGCTGATACTAGGCGTGGTGTCAGTTCATTGAATCTCATCATGGGGAACAAGgtat-tcacacatgaagtatactagggaggtgtttgatttgaggaatt-------actatatcca----aaatgagttggtgtatcatgggtcca--ttcctcaaatttggtgg---------------

upper sequence: GLYMA05G21570.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G34630.2 (Arabidopsis thaliana), 5'ss of exon 6
GTGGCAAGCCTTCTTCACGATGATGTACTGGATGATGCAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttg-gttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcag
|| ||||| || || |||||||||||  |||||||||| ||| | || |||||| ||||||| || ||| |||||||||| || ||||||           ||      |  | |   ||   || || |  ||   | ||| | |  | ||     ||  | |    ||     ||| | ||  |||                             
GTCGCAAGTCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAATGTTGTAATGGGTAACAAGgtactcacttgacagtagaagctaagacatgattaaatatgctttttggcgattgtgctgcaatttggatatgaagatcaccat----tggcttcatgttgtag--------------------------

upper sequence: GLYMA05G21570.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0024g00850.t01 (Vitis vinifera), 5'ss of exon 6
GTGGCAAGCCTTCTTCACGATGATGTACTGGATGATGCAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttggttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcag
||||| ||||||||||| ||||||||  |||||||||| ||  | |||||||||||||||||||| ||| || | |||||||||||||||         |||  |||  ||   || |  |  ||||    |||||  |    |  | | || | ||||| |  |  | |        |||  ||   ||       |||                
GTGGCTAGCCTTCTTCATGATGATGTCTTGGATGATGCTGAAACGAGACGTGGTATTGGTTCATTAAATATTATGATGGGCAATAAGgtac--------ttgcattttcttactctctggga-atct---tattttcctcctttcttttcta-tgaatacgtttttcccccccaaatatgcttctgctttttaacaattt----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424725|gb|CA936245.1|CA936245
EST:     CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAG                         TTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT
genomic: CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctga ... aaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT
EST: gi|151411625|gb|EV281436.1|EV281436
EST:     CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAG                         TTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT
genomic: CAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctga ... aaaaatgcagTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTT