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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTTGGTAATGTCATAAGTGCACTGGGGGATGAAAAAAAGAGGAAGGAGGGTGTGCATGTTCCCTATCGGGATAGCAAACTCACTCGACTCTTACAGgtcagaataacattttgttgtttgacatactagttatatatataaacacagactatcaatgtatggttcaaacatcaagatttggtcctttcacaataaa...

Basic information

species Glycine max
transcript GLYMA05G15750.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTGGGGGATGAAAAAAAGAGGAAGGAGGGTGTGCATGTTCCCTATCGGGATAGCAAACTCACTCGACTCTTACAGgtcagaataacattttgttgtttgacatactagttat-atatataaacacagactatcaatgtatggttcaaacatcaagatttggtcctttcacaataaa
||| |||||||||||||| ||||||||||||||||| |||||| |||| || |||||||||||||| ||||| ||||| ||||| |||||||| || |||||  ||  || ||| || |  |  | ||  |  || | | |||| ||    |  ||  |||  ||  | ||  | | |   |||  |         || ||
TGCACTTGGTAATGTCATCAGTGCACTGGGGGATGAGAAAAAGCGGAAAGAAGGTGTGCATGTTCCTTATCGAGATAGTAAACTTACTCGACTTTTGCAGgtttgatcaatattgtgcttatctatatgatgtttctgagatatgaa-gttgtttaggaataaattctgcattcctgattttttcatggcaaagtgatcaa

upper sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ26093 (Selaginella moellendorffii), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTGGGGGATGAAAAAAAGAGGAAGGAGGGTGTGCATGTTCCCTATCGGGATAGCAAACTCACTCGACTCTTACAGgtcagaataacattttgttgtttgacatactagttatatatataaacacagactatcaatgtatggttcaaacatcaagatttggtcctttcacaataaa
 |||||||| |||||||| |||||  |||| ||||| |||||  | || || || | ||||||||| ||| ||||||||||||||||||| || || |||||   | |      | | | |||   ||     ||  | |   ||||     |                                               
AGCTCTTGGAAATGTCATCAGTGCTTTGGGAGATGATAAAAAACGTAAAGAAGGAGGGCATGTTCCTTATAGGGATAGCAAACTCACTCGTCTATTGCAGgt---actgttgcgtaggttttttttattgcgttttgacaagaaaacctgtgcag---------------------------------------------

upper sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ10856 (Selaginella moellendorffii), 5'ss of exon 6
TGCTCTTGGTAATGTCATAAGTGCACTGGGGGATGAAAAAAAGAGGAAGGAGGGTGTGCATGTTCCCTATCGGGATAGCAAACTCACTCGACTCTTACAGgtcagaataacattttgttgtttgacatactagttatatatataaacacagactatcaatgtatggttcaaacatcaagatttggtcctttcacaataaa
 |||||||| |||||||| |||||  |||| ||||| |||||  | || || || | ||||||||| ||| ||||||||||||||||||| || || ||||| |   |  | |   ||| |||   ||     ||  | |   ||||     |                                               
AGCTCTTGGAAATGTCATCAGTGCTTTGGGAGATGATAAAAAACGTAAAGAAGGAGGGCATGTTCCTTATAGGGATAGCAAACTCACTCGTCTATTGCAGgt-actgttgcgtag-gtttttttttattgcgttttgacaagaaaacctgtgcag---------------------------------------------