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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag

Basic information

species Glycine max
transcript GLYMA05G14330.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G445100_T01 (Zea mays), 5'ss of exon 7
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctt--tttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag-------------------------------------------------------------
||||||||| |||||||| || || ||||||||||| ||||||||||||||| | |||||| | || || || || ||||| ||||| || |  ||  ||| |||  ||||     || |      |  |||     |   ||  | | | || | |   ||     | |||   |  |    |  |   ||    |  |||   | |||   ||                                                              
ACCTTTTGGTTGTGGTGTTATTCTTGGAGGTTATGATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCGTATgtaagttg-ttactgt-attgcatagttgtatcaatgtgagtgcataggcttatg-gctttagctttttcatgaattatgcatcccaccagtcacacgttcatgaatgaccttgtttttaagttgcattacacattaggagtcttgtgagtttgaaatacataatgtttattgactttacgaacttgaacag

upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G028346_T02 (Zea mays), 5'ss of exon 1
---------------ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag
               ||||||||| || ||||| || || ||||||||||| ||||||||||||||| | |||||| | || || || || ||||||||||| || |  ||  ||| |||  ||||     ||      | | ||| | |     ||   | |   |     ||| |   || ||||   |||   |   |                            
TTTCTGTTATATCAGACCTTTTGGTTGCGGTGTTATTCTTGGAGGTTATGATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttg-ttactgt-attacatagttgtatcattgtatttgtatcaatgtgagtgtg-taggcttatggctttagcttttacatgaactatgcattccact--------------------------

upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G028346_T01 (Zea mays), 5'ss of exon 5
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag
||||||||| || ||||| || || ||||||||||| ||||||||||||||| | |||||| | || || || || ||||||||||| || |  ||  ||| |||  ||||     ||      | | ||| | |     ||   | |   |     ||| |   || ||||   |||   |   |                            
ACCTTTTGGTTGCGGTGTTATTCTTGGAGGTTATGATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttg-ttactgt-attacatagttgtatcattgtatttgtatcaatgtgagtgtg-taggcttatggctttagcttttacatgaactatgcattccact--------------------------

upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G130398_T01 (Zea mays), 5'ss of exon 7
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact-ttttgtcatttgatagcaacttccagacttctttataattacacatgcaattga-tattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag---------------------------------------------------------------
 |||||||| |||||||| || || ||||||||||| |||||||| |||||| | |||||| | ||||| || || |||||||| || || |  |  | | | |  |  | | | |  |  || | | |         |  |  | |||| | ||  |||     |||  ||       |||  |||  |||    |  |||   | | |   |                                                                 
GCCTTTTGGTTGTGGTGTTATTCTTGGAGGTTATGATAGGGATGGGCCACAGCTCTACATGATAGAACCCTCAGGAGTTTCCTACgtaagttgttactgtattacatagttgtatcaacgtgagtccataggctcattagttttatttgaattttgttttccatcagtcgcacactcattttcagtatggatggcattgtttttaagtagcctttcactttaggagtcttgtgaaattttgaagtacataatgtttattggcattacaaacttgaccag

upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 7
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag
 |||||||| || ||||| || || ||||||||||| |||||||| |||||| | |||||| | ||||| || || ||||| ||||| || |  |  |     |    ||   | ||  |    ||   || | | || | ||   |  | ||  |||    | |    ||||  |   |  || |||                          
GCCTTTTGGCTGCGGTGTTATTCTTGGAGGTTATGATAGGGATGGGCCACAGCTCTACATGATAGAACCCTCAGGAGTTTCTTATgtaagttggtactgcatttccattacatagttgta----tcaacatgagtgcataggctcattgtgttagtttgaatatgaattatgtcttccatcagtcatgt-------------------------

upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 5'ss of exon 6
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag
 |||||||| ||||| || || || ||||||||||| || |||||||| || ||||||||| ||||||| || ||  | || ||||| || || ||| || |  | ||||      |  |      | |  ||||  || |    ||    |  | |  |   | |||       ||||  || |                             
GCCTTTTGGCTGTGGGGTTATTCTTGGAGGTTATGATAGAGATGGACCTCAATTGTACATGATTGAACCATCAGGCATATCATATgtaagtta-tttctgcccgtagatatgtgtctttaag----tatgaaattttacgttatttttccctgtcatcatatgaattc-------tattcctgcag----------------------------

upper sequence: GLYMA05G14330.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 6
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgata-------gcaacttccagac---ttct-ttataa----ttacacatgcaattgatattcctt-----tttggaagttccatg-tggtatttttgtaatgatttgttcatttggtaattgttctag--------------
||||||||||||||| || || || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |  | |||| |||  | |        |    |  || |    |||| |||| |    |||| |||| |  |  || || ||     ||  ||| ||   || |||| || ||       ||| ||||||| ||  || || |                
ACCTTTTGGATGTGGAGTAATTCTTGGAGGTTATGACAGAGATGGACCACAATTGTACATGGTTGAACCTTCTGGTGTTTCCTATgtgagttgatatttggcataagttgtagagctgtggttatcaaatgtattctgttatgagcttttactcatgtatctactactctttcagtcttcagaatttatgtggtggtgttatttgggaatttttttcattttgtgcttcttttttttttttggttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193544395|gb|FK502650.1|FK502650
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|23726817|gb|BU761411.1|BU761411
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGCAAAGGCAGGCAG
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAG
EST: gi|23726961|gb|BU761493.1|BU761493
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192295112|gb|FG986831.1|FG986831
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192295381|gb|FG986995.1|FG986995
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|193568471|gb|FK522624.1|FK522624
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|31309584|gb|CD394787.1|CD394787
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192312343|gb|FK005347.1|FK005347
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192320029|gb|FK013357.1|FK013357
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192324604|gb|FK018730.1|FK018730
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGCTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|208085744|gb|GD882390.1|GD882390
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151400518|gb|EV270332.1|EV270332
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|15200376|gb|BI424317.1|BI424317
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|298165082|gb|HO011131.1|HO011131
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGG
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGG
EST: gi|15202371|gb|BI425366.1|BI425366
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|213590582|gb|DB973327.1|DB973327
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|22927906|gb|BU545045.1|BU545045
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCNNCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|14205743|gb|BG839421.1|BG839421
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192332050|gb|FK024552.1|FK024552
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151409026|gb|EV278834.1|EV278834
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|193480530|gb|FK446852.1|FK446852
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|254338069|gb|GR849701.1|GR849701
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151410622|gb|EV280437.1|EV280437
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|16348120|gb|BI973715.1|BI973715
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCT
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCT
EST: gi|192303719|gb|FG994557.1|FG994557
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|17963995|gb|BM270737.1|BM270737
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192320028|gb|FK013356.1|FK013356
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|9439895|gb|BE440407.1|BE440407
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|208325123|gb|GE118357.1|GE118357
EST:     ACAGGGATGGACCACAGTTGCACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATAATTTACGGTGCTGCAA
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATA-TTT-CGGTGCTGCAA
EST: gi|151411428|gb|EV281239.1|EV281239
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|298174725|gb|HO014756.1|HO014756
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGCGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|193445806|gb|FK414045.1|FK414045
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|207713803|gb|GD696262.1|GD696262
EST:     CATGGTTGAACCTTTCCGGTTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
genomic: CATGGTTGAACC-TTCCGG-TGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|298195782|gb|HO044173.1|HO044173
EST:     ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTAT                         AGATATTTCGGTGCTGCAATTGGG
genomic: ACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctact ... attgttctagAGATATTTCGGTGCTGCAATTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATgtgagctactttttgtcatttgatagcaacttccagacttctttataattacacatgcaattgatattcctttttggaagttccatgtggtatttttgtaatgatttgttcatttggtaattgttctag

- - - - - - - - - - - - - - - - - - - - GATGGA