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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGGTCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGgttagtcttacttttctgatgaaatcttgaaaattagtaccttactaccttgacaagcaagggtgtgtttgatttttctttgtttgttgatatgtttaat...

Basic information

species Glycine max
transcript GLYMA05G09360.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 5
TGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGGTCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGgttagtcttac-ttttctgatgaaatcttgaaaattagtaccttactaccttgacaagcaagggtgtgtttgatttttctttgtttgttgatatgtttaat-------
||||||||||| || || ||  | || |||||||| || ||||| || |||||| | || || |||||||| |||||| ||||||| || || ||||||||||||  | |  | ||   |||  |   ||| | |||||     |||    |          |     |||| || | |   ||    || |||  ||||        
TGGGATCTGACAGCTGGAAAGTTATTACATGATTTCAAGTGTCATGAAGGCCAGATTCAGTGCATAGATTTCCATCCCCATGAGTTCCTTCTGGCAACAGgttaggttcagatgttacaatgctaatctgacacttagtcatcaacttttcttt--------gacccttttggttgtacagcgtagtctgttatacttaactcttggg

upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
TGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGGTCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGgttagtcttact-tttctgatgaaatcttgaaaattagtaccttacta--ccttgacaagcaagggtgtgtttgatttttctttgtttgttgatatgtttaat
|||||||| || || || ||  | || ||||| || || ||||| ||||| ||| |||| || ||||||||||||||| ||||||| || || ||||||||||||  | |   |||   ||| |    |     |||     | |||   | ||| |      || ||| ||   |  || ||| |  | | | || ||  | 
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaatttacaatgcatatctacttcttaactgttaacttttctttgtcccttttggttgtattatgtacttgtttat--ggttaaatcttgga-

upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 5
TGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGGTCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGgttagtcttacttttctgatgaaatcttgaaaattagtaccttactaccttgacaagcaagggtgtgtttgatttttctttgtttgttgatatgtttaat--------
|||||||||||||| || ||  | ||||| ||||| ||| |||| ||||||||| | || || ||||||||||||||  |||| ||||| || ||||||||| ||    | | || |  |  | |      | |  ||    | | |  |  |  |  ||  |    ||| |||||  ||| ||   ||  || | | |         
TGGGATCTGACTGCTGGAAAGTTGTTGCACGATTTCAAAAGTCATGAGGGCCAGCTTCAGTGCATAGATTTTCATCCTCATGAATTTCTGCTGGCAACAGgtcaga---aatcttattgtatactgc----attccgtgttctcccatttctatgattaaatgcaaatttcattttg-tttattgcatgcaatctctcactatggcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207836844|gb|GD807961.1|GD807961
EST:     TATAGATTTTCATTCCCAATGAGTTTCTACTAGCAACAG                         GCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTA
genomic: TATAGATTTTCA-TCCCAATGAGTTTCTACTAGCAACAGgttagtctta ... ctgggtttagGCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTA