Sequence
atgc intronic sequence ATGC exonic sequenceAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaataataccccagtgctatattgaatgtccgtgttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacag
Basic information
species | Glycine max |
transcript | GLYMA05G08220.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G08220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 8
AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaataataccccagtgctatattgaatgtccgtgttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacag
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CATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaa-gcttccagggcacattcttgttaataactgtggttatttcttgtaa--gaatgataccaatt--ttagaacagttatcatattaatatggttacatgaaa-----------------------
upper sequence: GLYMA05G08220.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ26224 (Selaginella moellendorffii), 5'ss of exon 5
AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaa----taataccccagtgctatattgaatgtccgt--gttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacag
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GATCCTGGGGGTGGCTTACGGCCTCCTCGCTGCTACCATGGCAATCCAAAGAATCTGGCAGCGGCATTACCATATCCTGACAAAGCGAGAGCTTACCAAGgtagagtttgatctctcgtgatcttatagaaggatgatcgatgggttgattgattttccag-------------------------------------------------------------------------
upper sequence: GLYMA05G08220.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ14522 (Selaginella moellendorffii), 5'ss of exon 5
AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaa----taataccccagtgctatattgaatgtccgt--gttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacag
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GATCCTGGGGGTGGCTTACGGCCTCCTCGCCGCTACCATGGCAATCCAAAGAATCTGGCAGCGGCATTACCATATCCTCACAAAGCGAGAGCTTACCAAGgtagagtttgatccctcgtgatcttatagaaggatgatcgatgggttgattgatttcccag-------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298193173|gb|HO033607.1|HO033607EST: GAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAG GAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGAC
genomic: GAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaataatac ... atgtttacagGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaataataccccagtgctatattgaatgtccgtgttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT