Sequence
atgc intronic sequence ATGC exonic sequenceCATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGgtaactcttttccttctaaatgttgatatatgtttttccccctcacttattctttataaattctgtgattattttttcatctcatgataataatgttgtg...
Basic information
species | Glycine max |
transcript | GLYMA05G07960.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G73950.1 (Arabidopsis thaliana), 5'ss of exon 6
CATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGgtaactcttttcc-ttctaaatgttgatatatgtttttccccctcacttattctttataaattctgtgattattttttcatctc-atgataataatgttgtg---
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CATTTCTGGGTTGCGATCTCCATGGTGTTCTTTCTCGCTGCTACAGTCTTTACCCTCCTTAAGCTGTCTGgtaataatttgccgctgtaatagttaattttaagtatgggcg-----ttatacttcctggaattcacaatcatgtttatagctagatattttctgtctagtgacc
upper sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 5'ss of exon 6
CATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGgtaactcttttccttctaaatgttgatatatgtttttccccctcacttattctttataaattctgtgattattttttcatctcatgataataatgttgtg-----
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CACTTTTGGGTTGCAATCTCCATGGTCTTCTTTGTTGCTGCTACATTGTTCACCCTTCTAAAGCTATGTGgtaatctctctctctc----tctctctctctctctctccccataacatattttctataattgcaatt-ttatgttgtgatttccaatctatcctttatttacattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208240623|gb|GE036009.1|GE036009EST: TATGGTGTTCTTCGTTGCTGCTACAGCCTTCACACTCCTAAAGCTTAGTG GTGATGTAGGTGCTCTGGG
genomic: TATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGgtaactcttt ... tctaatacagGTGATGTAGGTGCTCTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGgtaactcttttccttctaaatgttgatatatgtttttccccctcacttattctttataaattctgtgattattttttcatctcatgataataatgttgtg
- - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc