1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgatgattctttattcatataccttctatgcaaataaaatgcttattgctacaaatacaaataagtgctaacctacacatatagataggggttt...
species | Glycine max |
transcript | GLYMA05G05580.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCCTAACT-AGTCGGATATGAAGTTGGCEST: gi|151398929|gb|EV268800.1|EV268800
genomic: ATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTT-CTTTTTGAGTCGGATATGAAGTTGGC
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCAGATATGAAGTTGGCAEST: gi|151409699|gb|EV279507.1|EV279507
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAEST: gi|192316102|gb|FK007163.1|FK007163
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAEST: gi|17023266|gb|BM094300.1|BM094300
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATEST: gi|7284862|gb|AW597349.1|AW597349
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGAT
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAEST: gi|151410148|gb|EV279956.1|EV279956
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAEST: gi|6726203|gb|AW310557.1|AW310557
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAEST: gi|17023184|gb|BM094218.1|BM094218
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGGAEST: gi|213620263|gb|DB961408.1|DB961408
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGAEST: gi|192316103|gb|FK007164.1|FK007164
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGA
EST: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAG GTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
genomic: CATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgat ... tttctgacagGTCAAGCAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGgtaggatgatgattctttattcatataccttctatgcaaataaaatgcttattgctacaaatacaaataagtgctaacctacacatatagataggggttt
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