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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttctttcatattcactttagcaatatctcatggctgtacatagcactttgtcatgatttagctttgtacctcaatgcag

Basic information

species Glycine max
transcript GLYMA05G03150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttctttcatattcactttagcaatatctcatggctgtacatagcactttgtcatgatttagctttgtacctcaatgcag-------
|| || || ||||| || || ||  |||| || || |||||||||||| ||||||| || ||||| ||||| ||||||||||| ||||| || | | | |||| ||| |    ||| |    ||  |||| | | ||| |      |  |   || |  |||   | |||  | ||  | |   |       
TCATCCTTCATTGGCCGTGCTTCAACCAAGAACAAAGGCAGAATGGCTAGATATCTGGCGAACAAGTGCTCCATTGCATCACGCATTGATTGTTATTCAGgttagttgc----atagttctgtttccaatttgt-atgtccactagttactgcttttgctgaaagaacttgctgccatattttggaattcag

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgttt-------ctttcatattcactttagcaatatctcatggctgtacat------agca-ctttgtcatgatttagctttgtac--ctcaatgcag
|| || |||||||| || || ||  | || || ||||||||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||   | |||| |||        || |   |      |      |||   | |  |   |||      |||| |||| | ||  ||| |   |||||   | | | |||
TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtatgctaagtttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G110233_T01 (Zea mays), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtt---------tctttca------tattcactttagcaatatctcatgg--ctgtacatagcactttg-tcatgatttagctttgtacctcaatgcag
|| || |||||||| || || ||  |||| || ||||||||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||   | |||| |||         ||| | |      | ||   | |   | | | || | |  |   |   | ||  ||| |  |  | || |||| ||  |   | |||
TCCTCCTTTATTGGCCGTGCTTCAACCAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttctaggaagctctgttaccggactgttttgtatgctattgtttcctcgatccaaaagcatcatcttgattgttttatacctttatatttggtttcag

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttctttcatattcactttagcaatatctcatggctgtacatagcactttgtcatgatttagctttgtacctcaatgcag-------
||||| || ||||| || |||||||| || || |||||| | || ||||| |||||||||||||| ||||| || ||||| |||||||| || |||||||||     |||   | | || ||| |  || |  |   |  | |  ||     | ||  |   || |  | ||| ||   |||          
TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatct--gaaactc-cttgaagaagagttttggattatgaattctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttctttcatattcactttagcaatatctcatggct-gtacatagcactttgtcatgatttagctttgtacctcaatgcag---------
||||||||||||||||| |||||||||   || |||||  | |||||||| |||||||||||||| || || ||||| || || |||||||| |||||||||  |||||| | | ||||  | ||     || ||||  ||  |  || |||  || | ||    ||  |||||  | ||||             
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctat-aaattc-ttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208324762|gb|GE122774.1|GE122774
EST:     ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
EST: gi|193487050|gb|FK448853.1|FK448853
EST:     ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
EST: gi|193430229|gb|FK397249.1|FK397249
EST:     ATATCATGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
EST: gi|23730685|gb|BU763438.1|BU763438
EST:     ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
EST: gi|208289353|gb|GE085800.1|GE085800
EST:     ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
EST: gi|208300964|gb|GE098503.1|GE098503
EST:     ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAG
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAG
EST: gi|7587859|gb|AW703666.1|AW703666
EST:     ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC
genomic: ATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttct ... ctcaatgcagAAAGGGGTACTACTGTTTTTGGGGAGAAACTGCGTGAGCAAGTTGAGGAAC