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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttctttttgcccacctgtgattatttattgttttggacttgttgcactatgcgtaatactaagagcagttcctggttgataggggtgttagtag...

Basic information

species Glycine max
transcript GLYMA05G02740.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttctttttgcccacctgtg-attatttattgttttggacttgttgcactatgcgtaatactaagagcagttcctggttgataggg---gtgttagtag---------
| ||||||||||| ||| | || ||||| ||  |||||||||| || ||||| ||||| || || || ||||| |||||||| ||||||||||| ||     | ||  |    |||| ||||  |    | | ||  ||| |  | ||| | |  | |    |  |   ||| |||  |        | || || |         
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatat-ggttttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394814|gb|EV264685.1|EV264685
EST:     AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: gi|21994008|gb|BQ785536.1|BQ785536
EST:     AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: gi|208116354|gb|GD920377.1|GD920377
EST:     AAAACATACCACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
EST: gi|58016463|gb|CX703205.1|CX703205
EST:     AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG                         AGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT
genomic: AAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttct ... atttttacagAGTTCATCTAGATCATCATGTTCCTATTTCAAGAGAGTTCCCAAATCAAGT