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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGgttattgcaatagtgttcccacttttttattcttctgtatgctattgtttgtcacttttggatatctatatttgtatcttgctgatcttttcaaagaaaaaaatattttgtgctctgaatcgacataattaaatgtcatttgggtgattattgacgagtgcattttcctgcttgatatcatgatattatag

Basic information

species Glycine max
transcript GLYMA05G02590.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02590.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGgttattgcaatagtgttcccacttttttattcttctgtatgctattgtttgtcacttttggatatctatatttgtatcttgctgatcttttcaaagaaaaaaatattttgtgctctgaatcgacataattaaatgtcatttgggtgattattgacgagtgcattttcctgcttgatatcatgatattatag
|| ||||| ||||| ||||||||  | |||||||| ||||||||| | |||||||||||||| || ||||||||||| ||  | ||||| ||||||       || |      |  || |||   ||  |||| || |||||    |   | ||  || |   ||| | |  |||        | |||  |     ||||||||                                                                                
ATCCGACCTGATAGACAAACACTTCTTTGGAGTGCAACATGGCCACGAGAGGTTGAAACTCTTGCCAGGCAGTTTCTACGAGATCCATATAAGgtttacttgctatttagtttaacttattaggattgagtatactgttgttgaataaagtaggggatgt---tttatgttgtgca------ctgaaaacagttgttattttgtag------------------------------------------------------------------------------

upper sequence: GLYMA05G02590.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 6
ATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGgttattgcaatagtgttcccacttttttattcttctgtatgctattgtttgtcacttttggatatctatatttgtatcttgctgatcttttcaaagaaaaaaa--tattttgtgctctgaatcgacataattaaatgtcatttgggtgattattgacgagtgcattttcctgcttgatatcatgatattatag
|| ||||||||||| || ||| |||  |||||||| ||||||||||||||||| |||||||| || ||||||||  | || || ||||||||||||  ||   |||| | || | |   |   |  ||   |||| |        ||     |  |||  || |   | |  ||   | ||||  |||     |    ||||  ||||| || |   | || |                                                               
ATCCGACCAGATAGACAGACATTATACTGGAGTGCCACATGGCCAAGGGAGGTGGAAACTCTAGCGAGGCAGTTCTTACGTAATCCATACAAGgttcgtgttgtagt-tccctattccatatgttatccagatgcaag-------caaaaccgtgtatgcat-tagatgtgctgtaaagctttagaaaatgtgatgcttattcagtgctttgtaa-aatattag--------------------------------------------------------------