Sequence
atgc intronic sequence ATGC exonic sequenceGTAAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAgtaagtagtgcatgtctctttcttcttcctttgtttccttgtaccctcttttctttcacatcttacaacatgtgctatttgatag
Basic information
species | Glycine max |
transcript | GLYMA05G02460.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G02460.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g28000.1 (Oryza sativa), 5'ss of exon 5
GTAAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAgtaagtagtgcatgtctctttcttcttcctttgtttccttgtaccctcttttctttcacatcttacaacatgtgc---tatttgatag
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GTCAGCCCTGAGCTGTATGGAGACAGTAACCCAAGGTTCTTCACATATTGGACAgtaagt-gtgactgctacaaactgtcacaaaaaatt--ttgtgtttttcaaggtagaatttgaagtaatttgtacatacaattttcag
upper sequence: GLYMA05G02460.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g07764.1 (Oryza sativa), 5'ss of exon 5
GTAAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAgtaagtagtgcat-------gtctctttcttcttcctttgtttc----cttgtaccctcttttctttcacatcttacaacatgtgctatttgatag---------------
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GTGAGCCCTCAGCTGTACGGTGACAACAACCCAAGGTTCTTCACGTATTGGACAgtaagttctttgctagtaaagtagtaatctgttcctagtgtttcagtattagaagagagatagatcagtcagttcaaagaacaagttactgaagaatgatgcattgtgcag
upper sequence: GLYMA05G02460.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 5
GTAAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAgtaagt-------agtgcatgtctctttcttcttcctttgtttccttgtaccctcttttct----ttcacatcttacaa-catgtgc-tatttgatag--
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GTGAGCCCTGAACTGTATGGAGATAACAACCCAAGGTTCTTCACATACTGGACAgtaagtcctctcttctgcaccaatcccactgctccctccattttaatttacttgctgttctagatttgtcataagataagcatgtctatctttaaccattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17963485|gb|BM270234.1|BM270234EST: GGAGACAACTATCCTAGGTTCTTCACTTATTGAACA ACGGATGCATATCAAGCAACAGGATGCTACAACTTACTATGTTCAGGATTT
genomic: GGAGACAACTATCCTAGGTTCTTCACTTATTGGACAgtaagtagtg ... tatttgatagACGGATGCATATCAAGCAACAGGATGCTACAACTTACTATGTTCAGGATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAgtaagtagtgcatgtctctttcttcttcctttgtttccttgtaccctcttttctttcacatcttacaacatgtgctatttgatag
- - - - - - - - TGGAGA