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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAAGTTAATACAAAGAGTTTCTCCAAAGAGTTACCAGCAGGCTTTTGGGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAGgtatatcaaaataagatatgttagtgctaaataaatgtaatcccaagtacaaatatgccattctctgtaatggattgatggaagaatctaaattgctcat...

Basic information

species Glycine max
transcript GLYMA05G01300.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01300.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G62530.1 (Arabidopsis thaliana), 5'ss of exon 6
TACAAAGTTAATACAAAGAGTTTCTCCAAAGAGTTACCAGCAGGCTTTTGGGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAGgtatatcaaaat----aagatatgttagtgctaaataaatgtaatcccaagtacaaatatgccattctctgtaatggattgatggaagaatctaaattg----ctcat------------------------------------------------------------------------
  | | |||||| ||||| ||| ||||||||||||||||||| |||  ||| ||||| | ||| ||||  |||||| |||| || ||||| || ||||||||| || |   |    |  || | ||| |            || |       |||| |  |  |||||          ||     ||    ||| || |     ||||                                                                        
CGCGAGGTTAATTCAAAGGGTTGCTCCAAAGAGTTACCAGCAAGCTGCTGGAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGgtacattactctcttcaccattttttattttggttcctggctattagtttcaacaacttagtaattcttgaaggcatgttctcaaaaatgcctatatagacatttcatgtttgtggctgaatttccgaaattacatctttaaatgtatgtttatgatttcgcttcactttcttttatcag

upper sequence: GLYMA05G01300.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 6
TACAAAGTTAATACAAAGAGTTTCTCCAAAGAGTTACCAGCAGGCTTTTGGGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAGgtatatcaaaataagatatgttagtgctaaataaatgtaatcccaagtacaaatatgccattctctgtaatggattgatggaagaatctaaattgctcat---
 || | |||||||||||||||| ||||||||||||| || |||||| |||| ||||||||||| |||||||| ||||| ||||||||||  || |||||||||||| |  ||||  || |  |   | |||  | | |  |  ||  |  |||   |         | ||  ||  | |    |||  |  ||   | ||   
CACTAGGTTAATACAAAGAGTTGCTCCAAAGAGTTATCAACAGGCTCTTGGTGAAGTTTATGTTACACAAAAATTTCTGGAGAATTTTTCTGGTGATCAGgtatatgatgataattta-gcaa--acaaaaccatttttctgtcagttgaaaaagaggacaaaaaaggaaaagaaagttccgtgaaattgcataattgatgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329935|gb|FK021521.1|FK021521
EST:     GGGAAGCTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAG                         GTTCGTTTCCTGGCAAGGTCTTTTGGTATCCCTGGAAATCATCTTGGACAA
genomic: GGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAGgtatatcaaa ... atctttacagGTTCGTTTCCTGGCAAGGTCTTTTGGTGTCCCTGGAAATCATCTTGGACAA
EST: gi|22931742|gb|BU548881.1|BU548881
EST:     GGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAG                         GTTCGTTTCCTGGCAAGGTCTTTTGGTGTCCCTGGAAATCATCTTGGACAA
genomic: GGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAGgtatatcaaa ... atctttacagGTTCGTTTCCTGGCAAGGTCTTTTGGTGTCCCTGGAAATCATCTTGGACAA