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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggctttagtcgatgtgtgtaattgtatgtattcatttgatgcaacaaatactgaaatatcttatactgcatatgttctcattctgtctgtctgggtg...

Basic information

species Glycine max
transcript GLYMA04G43390.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193614874|gb|FK562856.1|FK562856
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|193682413|gb|FK624617.1|FK624617
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|14012147|gb|BG727069.1|BG727069
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|254340902|gb|GR854630.1|GR854630
EST:     CCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: CCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|254340903|gb|GR854631.1|GR854631
EST:     ATTTGAGTATCTCCAG                         ATG-TACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: ATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|193681609|gb|FK623331.1|FK623331
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAAC
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAAC
EST: gi|31561978|gb|CD487816.1|CD487816
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|254326214|gb|GR840806.1|GR840806
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|298187350|gb|HO034499.1|HO034499
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
EST: gi|120533661|gb|EH261794.1|EH261794
EST:     GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAG                         ATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG
genomic: GTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAGTATCTCCAGgttggcttta ... gtttttgcagATGTTACAAACAATTGCAATGTCAATGAGGTGTATTGGTCCCCGTGCAATG