1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcagatctttgttaataataaaaaaaatgtgtgagaaagacattggataatctgacaggagtgtcatatttgattttactttaacttgtag
species | Glycine max |
transcript | GLYMA04G43340.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATNNTCTTTEST: gi|23052841|gb|BU577332.1|BU577332
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTEST: gi|8827480|gb|BE211210.1|BE211210
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: GAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTEST: gi|151395197|gb|EV265068.1|EV265068
genomic: GAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTTEST: gi|192305500|gb|FG994294.1|FG994294
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
EST: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA GAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
genomic: ATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcaga ... taacttgtagGAACATGTAGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAgtaaggcagatctttgttaataataaaaaaaatgtgtgagaaagacattggataatctgacaggagtgtcatatttgattttactttaacttgtag
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - AGCTCA