Sequence
atgc intronic sequence ATGC exonic sequenceAAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtagacaaatacattactatttttgtttttccatgcggtgtggtaactgtttatttacttccttttattccatgccaaaacag
Basic information
species | Glycine max |
transcript | GLYMA04G42390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G42390.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G21590.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtagac----aaatacattactatttttgtttttccatgcggtgtggtaactgtttatttacttccttttattccatgccaaaacag
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AAGAACGTTATTTCCCTTTTAGGTTATTGCTTTGAAAACAATAACCTGTTACTAGTATATAATTATCTCTCAAGAGGAAGCCTTGAAGAGAATCTTCACGgtaagcctctgaccatttagccacttgcagattttcttgtgttctggtt-ctaacaatcaaggt--ttgagattgagattag-----
upper sequence: GLYMA04G42390.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G77280.1 (Arabidopsis thaliana), 5'ss of exon 6
AAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgta-------gacaaatacattactatttttgtttttccatgcgg---tgtggtaactgtttatttacttcct--tttattccatgccaaaacag
|| || ||||| |||||| | || || |||||||| | || ||| | || || || ||| | |||||||||||||||||||||||||||||||||| ||||| | || | ||| || | | | | | | || || | || || ||| || |
AAGAATATTATCTCCCTCTTAGGATTTTGCTTTGAAGACCATAACCTTTTACTTGTATACAATTATCTCTCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtactttttagacaagccctttgccttttaaagcaactcagggatacttattatgatcatggatctaacaaatgcttggtttcatacccag----
upper sequence: GLYMA04G42390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 5
AAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtag-acaaatacattactatttttgtttttccatgcggtg--tggtaactgtttatttacttccttttattccatgccaaaacag-----------------------
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AAGAACATCATTTCCCTTTTGGGCTTCTGTTTTGAGAACAATAATCTTCTCCTGGTTTATGATTTCTTATCAAGAGGAAGCCTGGAGGAGAACCTTTATGgtaccagagttacacaaaaacttttctttttttagatattaaattgaaattgaagacagttgtgttcttaattagcgatatgtttcttgttggttctttattgaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22525551|gb|BU084362.1|BU084362EST: TCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATG GTAATAAGAAAATTTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAG
genomic: TCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtagacaaat ... gccaaaacagGTAATAAGAAAATTTCACTTGTGTTTGGTTGGTCCGAGAGATATAAGGTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtagacaaatacattactatttttgtttttccatgcggtgtggtaactgtttatttacttccttttattccatgccaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA