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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATTGGAAATATGCAGgttggtgtcaaatatctctttattgtctgttaatcaagcagtaatactggcaagcagcactatttgttgattttggaataaaatggttagcagtgccata...

Basic information

species Glycine max
transcript GLYMA04G41610.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41610.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g02560.t01 (Vitis vinifera), 5'ss of exon 6
GAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTGTTATTTGCATTCCTCATTGGAAATATGCAGgttggtgtcaaatatctct--ttattgtctgttaatcaagcagtaatactggcaagcagcactatttgttgattttggaataaaatggttagcagtgccata-
 |||||   |||||| |||||||| |||||||| ||||||||| | |||||||| ||  |||| ||||| |||||| |||| || |||||||||||||||||| |||   ||||| |||  |||||   | ||| | |     || ||   | |||||  |  |  || ||  |     ||||   || ||    |  || | 
AAACCTCAAAACAAGCACCTATGTCTGGGAAATTTGCTTTGCAGTGTTCATTTCCATCTCTGGCTTGGTTTTATTTTCATTTCTTATTGGAAATATGCAGgttagtgctgaatatttctatttattagttcttagttatttgatactatgtgtaagcatgag-agatgctgtgtaaatcataagtaggatat--atcacacac