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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag

Basic information

species Glycine max
transcript GLYMA04G41090.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g02380.1 (Oryza sativa), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag
|||||||||||||||||| |||||||||||||| || ||||| |||||||| || |||||||| || |||||| | ||||| ||||| ||||| ||||||||| || | |   |        | | |  |   |  |||  |||        |  |  |||| |       |    |   |   |||| |||||   |      
GAAGATGAGATCTCAATATATTCCTGAGGAGGCAAGAAGCACAATCATGAATTTCTTCCGCATACCACTGAACTTGTTTGTTTGTGTGGTGCTTTACAATgtaagtgaaagtgttc------ttactgaatctcatgattctaatc------tgttgatttccttcaaaaataacatttttttctgtgaattttgcag------

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g37520.1 (Oryza sativa), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag-------------------------
||||||||| || || || |||||||||||||| || ||||| ||||||||||| |||||||| || || ||| | ||||| ||||| || || ||||||||| ||  |  |||| |     |   |    | |   ||   || |    |  |  |    |  ||||   |||    |  ||     | | | |  |   ||                          
GAAGATGAGGTCCCAGTATATTCCTGAGGAGGCAAGAAGCACGATCATGAACTTCTTCCGCATACCACTCAACCTGTTTGTTTGTGTGGTTCTTTACAATgtaagtagctaaatccaacttctgtttttttttctttatgaaaataacacaccaacaag--caaatgcaaatgcaaaaaaaaaagacatttgtcccagtaacattaatcatacaaatgatgttctgcag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G064563_T03 (Zea mays), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtg-tagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag-----------
||||||||||||||| |||||||||||||| || || ||||| ||||||||||| |||||||| || || ||| | ||||| ||||| ||||| ||||| | | |   | || ||     |   | ||| |||  |  | |||   ||| | | |  | ||    |    | |      || | |   |  ||  ||  |  ||            
GAAGATGAGATCTCAGTACATTCCTGAGGAAGCGAGAAGCACAATCATGAACTTCTTCCGCATACCACTCAACTTATTTGTTTGTGTGGTGCTTTACAACgcaaggagc-cattccctctcccaactactatgttctct-ttagttgtgctggcaagaattatacagaaatatcagcacacaagtaacgctttgcctgtggacatggtctttgcag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G051189_T01 (Zea mays), 5'ss of exon 1
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtg-tagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag-----------
||||||||||||||| |||||||||||||| || || ||||| ||||||||||| |||||||| || || ||| | ||||| ||||| ||||| ||||  ||| |   | || ||     |   | ||| |||  |  | |||   ||| | | |  | ||   ||    | |      || | |   |  ||   |  |  ||            
GAAGATGAGATCTCAGTACATTCCTGAGGAAGCGAGAAGCACAATCATGAACTTCTTCCGCATACCACTCAACTTATTTGTTTGTGTGGTGCTTTACATCgtaaggagc-cattccctctcccaactactatgttctct-ttagttgtgctggcaagaattatatagaaatatcagcacacaagtaacggtttgcttgtggacatggtctttgcag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G077669_T01 (Zea mays), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtg-tgctttgactaattgtgtattttcttggtgcag
||||||||| ||||| |||||||||||||| || || ||||| |||||||| || |||||||| || || ||| | ||||| ||||| ||||| ||||||||| |       |   | | | ||  | ||||| || |   ||    |  || | |||   |  | | ||    ||||| ||   ||    || ||||  |||||
GAAGATGAGGTCTCAGTACATTCCTGAGGAAGCAAGAAGCACAATCATGAATTTCTTCCGCATCCCGCTCAACTTATTTGTTTGTGTGGTGCTTTACAATgtaag------gagtcattccctcg-tccaatg-gcaagaata----tacagaaatatcagcacacgagtaacactttgcctg--tggacgttgtcttt-tgcag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G067638_T01 (Zea mays), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgc-tttgactaattgtgtattttcttggtgcag--
|||||||||||||||||| ||||| |||||||| || ||||| |||||||| || ||||| || || || ||| | ||||| || || || || ||||||||| |   || |||     |||| |    ||  | | || |  | | | | ||  | ||||   ||   | |   | |   ||  | | ||| |   |   | |   
GAAGATGAGATCTCAATATATTCCCGAGGAGGCAAGAAGCACAATCATGAATTTCTTCCGTATACCGCTCAACCTGTTTGTTTGCGTGGTACTATACAATgtaagcagcaaaata----acttgag---aaaaccccatatccagattcttgtttttttttaaaatatatatatatatatatatatatatatatatatatagtaaca

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G27720.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacac-aatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag
|||||||||||| |||||||| || || || ||||| ||||| || |||||||||||||||||||||||||| || ||||| || |||||  ||||||||||| ||  | | ||  | ||  |||   || ||  |        |    || ||   || |   | ||     |   |||||| || | | |  |||        
GAAGATGAGATCCCAATACATCCCAGAAGAAGCCAGAAGCACAATAATGAACTTTTTCCGCATTCCTCTGAATATCTTTGTCTGCGTTGTATTGTACAATgtaagtccccccaacattctttttctgcaccata-gtagctgagatttcgt-gtcccatgtctctgtgttgtggtactgactagttttatgtgctctgaag----

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g02420.t01 (Vitis vinifera), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgt-------tacacaatctactacttcaatacaatgc---gcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag
|||||||||||| ||||||||||| ||||||||  ||||||| ||||||||||| |||||||||||||| || || ||||||||  ||||||||||||||||  ||       | || | ||   |  |||  |  | | |   || |    | | |  |   |  ||  ||| || | || | |   || |  |  || |             
GAAGATGAGATCCCAATACATTCCAGAGGAGGCACGGAGCACTATCATGAACTTCTTCCGCATTCCTCTCAATATCTTTGTGTGCATTGTGCTGTACAATgtgagtaggtttcttcatattcccttttttccctttagttctttgccagacgacctgattgagatcatactctcattcatgag-taaaacaagatcagttt-------------

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01290.t01 (Vitis vinifera), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtag-tattttcttatgc-gtgtgctttgactaa---ttgtgtattttcttggtgcag
||||||||| || || |||||||| |||||||| || ||||| ||||||||||| ||||||||||| || || || ||||||||  | ||||| || ||||||||| ||      || |   | ||| |  |||  || |||| || ||||||||  ||  || | ||  | |       ||| |   ||    |  || ||  |    
GAAGATGAGGTCCCAGTACATTCCAGAGGAGGCTAGAAGCACTATCATGAACTTCTTCCGCATTCCCCTCAATATCTTTGTGTGCATCGTGCTATATAATgtatgtaac----cttaatggcttaattcgctgcttgacctta-cattgtagtaggcatggtcatgtgaagagcagggcaactcaaccttacccacctttttttt----

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S8_271V6.1 (Physcomitrella patens), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatc--tactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag--------------------------------------------
||| ||||| || || || || ||||||||| | || ||||| |||||||||||||||||||| ||| | ||| |||| || ||||||||  | ||||||||| || |  |  ||  |  |   ||   || |  |      ||| |  ||    |  |  ||   |      ||   |  |  | | || | ||  ||   ||||                                            
GAAAATGAGGTCCCAGTATATCCCTGAGGAGTCGAGAAGCACAATCATGAACTTTTTCCGCATCCCTTTAAACGTTTTCGTCTGTGTTGTATTATACAATgtaagtcatgctttccctggtggatcttcacgactcttttctttatccttggtagaacaaatttggagattcatggaatcgccgagtttgaaatta-ttaaagcagcaagctgtctgacttctcttttggtttgttgctaaacatttcag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S18_8V6.2 (Physcomitrella patens), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttct--tggtgcag----------------------------------------------------
||| ||||| || || || || ||||| ||| | |||||||| |||||||| |||||||| |||||| ||||| | |||||||||||||| |||||||||||| |  ||  | |    ||    |||||  |    |    |     | || |       |   |    |  |   | |||| |||    || ||   ||   | |                                                    
GAAAATGAGGTCCCAGTATATCCCTGAAGAGTCGAGGAGCACAATCATGAATTTTTTCCGGATTCCTTTGAACGTATTTGTGTGTGTTGTACTGTACAATgtaagccac-tacttctttagaaaaatactttctttgtcgctttttctttattctgggaataacaaagataggaagttacta-ttggaagttgtcagatgagactgagttttcaacagatttctgacttctcttttggtttgttgttggctccttcag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S44_143V6.1 (Physcomitrella patens), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatct---taacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag---------------------------------
||||||||||||||| || ||||| |||||  |||| ||||||||||||||||  ||||| |||||||| |||||||| |||||| |||| ||||| |||||| |  ||||  ||| | ||  |  |    |  ||  |||   |  |  ||||  |  |     | ||     |   |  ||| || |||  | |  |   ||||                                  
GAAGATGAGATCTCAGTATATTCCGGAGGACTCCAGAAGCACCATCATGAACTACTTCCGAATTCCTCTCAACATTTTCGTGTGTATTGTTCTGTATAATgtaagcaacactgtctgcgaccgcttttttttttgcattctgctttcctttgtatgaacaagaattaatttcattttgtgaacttatcgtgcttatattatttgcaatgtcaaactcatcacttttcccatttgttccag

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ11977 (Selaginella moellendorffii), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag
||||||| | |||||||||||||| |||||  ||||||| || ||||||||||| ||||| |||||||| ||||| || || || || ||||| ||||| ||| ||| |    |||     || ||       || | | || | |   |||| ||   | |||                                        
GAAGATGCGCTCTCAATACATTCCAGAGGAATCCAGGAGTACAATCATGAACTTCTTCCGGATTCCTCTTAACATCTTCGTCTGCGTGGTGCTTTACAACgtaagtttctt--tctcaaggtttaacttctcccgtg-ttttgatatcttagttgtcgctactttcag------------------------------------

upper sequence: GLYMA04G41090.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ21113 (Selaginella moellendorffii), 5'ss of exon 6
GAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATgtatgttacacaatctactacttcaatacaatgcgcgatcttaacagtgtagtagtattttcttatgcgtgtgctttgactaattgtgtattttcttggtgcag
||||||| | |||||||||||||| |||||  ||||||| || ||||||||||| ||||| |||||||| ||||| || || || || ||||| ||||| ||| ||| |    |||     || ||       || | | || | |   | || ||   | |||                                        
GAAGATGCGCTCTCAATACATTCCAGAGGAATCCAGGAGTACAATCATGAACTTCTTCCGGATTCCTCTTAACATCTTCGTCTGCGTGGTGCTTTACAACgtaagtttctt--tctcaaggtttaacttctcccgtg-ttttgatatctttgttgtcgctactttcag------------------------------------