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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaactaacaatgcttgttacctttctaatggtgctgtatttctcag

Basic information

species Glycine max
transcript GLYMA04G40750.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttttctgttcatgatgcctatt-acatgtattagaagatgaatgaccat---agtgaac----taacaatgcttgt-tacc---tttctaatggt--gctgtatttctcag---------
|||| | |   |||| || ||| ||||||||||||| ||  | || ||||| || ||||||||||| |||||||| || || ||||||||| ||||||||||||  |   ||||  ||       ||||  |||  |||  |  || |||    ||   | ||||     |   ||| | |||  |||   | |||||  |   ||     ||||            
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 4
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgta-atgtttttctg--ttcatgatgcctattacatgtattagaagatgaatgaccatagtgaacta-acaatgcttgtta------cctttctaatggtgctgtatttctcag
|||| | |  ||||| || || ||||| |||||||| ||  | || || || || |||||||||||||||||||| ||||||||||||||  | |||||||||       ||| |   |||  || | |  |   |   ||    | | || |  |||  |    |     |||||  |||        |||   ||  | ||||  |   |||
TGCTCTAAATCTGTCAGGAACTATGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatactttgttt-taagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G036634_T01 (Zea mays), 5'ss of exon 14
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgta-atgtttttctg--ttcatgatgcctattacatgtattagaagatgaatgaccatagtgaacta-acaatgcttgtta-----cctttctaatggtgctgtatttctcag
|||| |||  ||||| || ||  ||||  ||||||| ||  | || || || || |||||||||||||||||||| ||||||||||||||  | |||||||||       ||| |   |||  || | |  |   |   ||    | | || |  |||  |    |     |||||  |||       |||   ||  | ||||  |   |||
TGCTCTGAATCTGTCAGGAACTGTGCTCAGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCGTACCCAGGgtatgcaaccttcaggaatcaacatactttgttt-taagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 4
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgta-atgtttttctgt--tcatgatgcctattacatgtat-tagaagatgaatgaccatagtgaacta-acaatgcttgttacc-tttctaatggtgctgtatttctcag
|||| |||  ||||| || ||  |||| |||||||| ||  | || || || || || ||||||||||||||||| ||||||||||||||  | |||||||||       ||| |   |||  || | | |   | ||   |||   | |  | |   | ||       |   |  ||   |   |||   ||  | ||||  |   |||
TGCTCTGAATCTGTCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCGAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatacttgtgttaagttcatagcccaaggttcattcttgtatctggtatggtatttaaaaaagtttgccatttttctgtgatctgcag

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 3
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaactaacaatgcttgt-tacctttctaatggtgct--gtatttctcag----------
|||| |||  || || || ||  |||| |||||||| ||  | || || || || ||||||||| |||||||||| ||||||||||||||  | |||||||||    |      |||| ||  |    ||| | | ||  ||| | |  |  ||  ||  |       | || || | |  ||  ||  | | |  | |||| || |          
TGCTCTGAATCTATCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTACCATTGCACCAGTCAATCCAACATTCCTACCCAGGgta----tgcaaccttcaggaatcaacatactt-tgttttaagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaagagtttggcatttttctgtgatctgcag

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 6
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaat--gtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaa-ctaacaatgcttgttacctttctaatgg---tgctgtatttctcag
|||| |||  ||||| || | ||||||||||||||| ||  | |  || ||||| |||||||||||||||||||| ||||||  ||||||  | |||||||||      | ||||       |     ||  | |   ||    | | ||||  |||  |  | || | |  |  | | |      |  | |   | ||||  |   |||
TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaaccaacatgcatgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaactaacaatgcttgttacctttctaatggtgctgtatttctcag-----
|||| ||||  || | || || |||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| || || |||||||||||||| ||||| |   | |  | ||  ||  ||| ||    | | ||      ||  ||| | ||     |  |  |    | |||| |||   |    | | ||     ||      
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgtg--gccaatcttttatctt------tgtttgatcttatcattcatatgacatat-ttactttttagaactggatataggctacaatgatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285563|gb|AW598050.1|AW598050
EST:     TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: gi|9203628|gb|BE329852.1|BE329852
EST:     ACCTTCAAAAACTGCCATTGCACGCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGANATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: ACCTTCAAAAACTGCCATTGCAC-CGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: gi|193540284|gb|FK494802.1|FK494802
EST:     TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAA
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAA
EST: gi|58018945|gb|CX705687.1|CX705687
EST:     TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: gi|58019174|gb|CX705916.1|CX705916
EST:     TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: gi|151412507|gb|EV282319.1|EV282319
EST:     TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: gi|193371147|gb|FK337388.1|FK337388
EST:     TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC