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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGATTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattactctttaccttgttgctttgttgaagtgcctctgaaactaaatttgcattgagcag

Basic information

species Glycine max
transcript GLYMA04G38800.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 22
TTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGATTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaa--cattactctttaccttgttgctttgttgaagtgcctctgaaactaaatttgcattgagcag----
||||||||| | || |  || |||||  ||||||||||||||||||||||||| ||||  |||||||| || || || ||||||||||||||||| |||||||    | ||  ||||  | | | |    | ||    |    ||  |||   |||   | |  ||      
TTTGAGAAGATCTATTTCCCTTATCTACTGATTAGCAAGAAGAGATATGCTGGTTTGTACTGGACAAATCCTGAGAAATTTGACAAAATGGACACGAAAGgtattttcttttgtcttgtcttagatatcatcttaccttcttgctttaacatgattctaactttgcttatag

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G115245_T01 (Zea mays), 5'ss of exon 6
TTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGATTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattactctttaccttgttgctttgttgaagtgcctctgaaactaaatttgcattgagcag------------------------------------------
||||||||||| || | ||| || ||  | || |||||||||||||||||||| ||||  ||||| || || || || ||||||||||||||  | |||||||  | ||    |||   | | ||  |     |    |   |   | |  || || |   ||  |                                          
TTTGAGAAGGTCTATTTTCCTTACCTTCTAATCAGCAAGAAGAGATATGCTGGTTTGTACTGGACGAATCCTGAGAAATTTGACAAAATGGATGCAAAAGgtattcctt---ttttgtttagctgtgtaaagcataaactattttcattggatgtggacacagatgttagttatccttcctttcaaatgtcttctatcttgcgtgcag

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 22
TTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGATTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGgtaaacattact--ctttaccttgttgctttgttgaagtgcct--ctgaaactaaattt----gcattgagcag
||||| ||||| || |  ||||||||  | |||| ||||||||| |||||||| ||| | |||||||| ||  |  | ||||||||||||||||| |||||||||  ||  |   |||||    |  || |  |  | | |||  || ||  | ||| |    |  ||  ||||
TTTGAAAAGGTCTATTTCCCATATCTTCTCATTAACAAGAAGAGGTATGCTGGTTTGCTATGGACAAATCCTCAACAGTTTGACAAAATGGACACCAAAGgtaaatcttcgtgattttacagcctctctcttattcatttcctgactaaatttcaatatcaccgactttggcag