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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTCGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacacatttgtgacacaaacccctgggacattcttatggtttgatctggattcatttgatgaataggtggtggctaggctgttgtctaggcaaag...

Basic information

species Glycine max
transcript GLYMA04G38320.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38320.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G135568_T01 (Zea mays), 5'ss of exon 4
CAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTCGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtac-acatttgtgacacaaacccctgggacattcttatggtttgatctggattcatttgatgaataggtggtggctaggctgttgtctaggcaaag
  | ||    |||||||| ||  |||||||||| |||||||||||| |||| ||    | ||||||||| ||||| ||| | ||||| |||||  ||||||||||||| | ||||           |  | |       |  |   ||       ||  |||||         |  |||     ||||| |  |  |    
TCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtaccatatttacagttttcttcttttgcttggcttcctttgtttcctcccatgtatttgtattgggaattttggtagcactgtttttaactcttg-