Sequence
atgc intronic sequence ATGC exonic sequenceGCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttttattctactatccacacctacatcacttgaaaatcaattaatcttgcatccagcttgcaaggtcgtttgatattttcctcaatagttgtg...
Basic information
species | Glycine max |
transcript | GLYMA04G37750.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G37750.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g00330.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttttattctactatccacacctacatcacttgaaaatcaattaatcttgcatccagcttgcaaggtcgtttgatattttcctcaatagttgtg-------
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GCTCTCCACCATGAGGGCTCTGGACAGCCTTGGGCTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGGTTTGCTTTGGATATTTTTCGAGCTGAGgta-----cttat-ctaatataagaacgttaaggtattaagtgtaaatcatacttagttcta-tttataggaaaatttgatgtcaatccaaggagctaggtatcact
upper sequence: GLYMA04G37750.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ29742 (Selaginella moellendorffii), 5'ss of exon 3
GCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttttattctactatccacacctacatcacttgaaaatcaattaatcttgcatccagcttgcaaggtcgtttgatattttcctcaatagttgtg
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GCTCTCCACAATGAGAGCTCTGGATGATCTTGGCCTGGACGTCCAGCAGGCTGTTATCAGCTGCTTCAATGGCTTCGTCCTCGACGTCTTTCGTGCCGAGgtataagttctcttttcctctc---gtgcaaatggt---aatggtggcttgttttgcag-----------------------------------------
upper sequence: GLYMA04G37750.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ28242 (Selaginella moellendorffii), 5'ss of exon 3
GCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttttattctactatccacacctacatcacttgaaaatcaattaatcttgcatccagcttgcaaggtcgtttgatattttcctcaatagttgtg
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GCTCTCCACGATGAGAGCTCTGGATGATCTTGGCCTGGACGTCCAGCAGGCTGTTATCAGCTGCTTCAATGGCTTCGTCCTCGACGTCTTTCGTGCCGAGgtataagttctttttt--tgttctcttttcc-tctcgtgcaaatgg--taatggtg-gcttgtttagcag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31476585|gb|CD418613.1|CD418613EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTGCATCCGGAGCAAATCAAAGCAGTACTC
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTGCATCCGGAGCAAATCAAAGCAGTACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttttattctactatccacacctacatcacttgaaaatcaattaatcttgcatccagcttgcaaggtcgtttgatattttcctcaatagttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacacc