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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAATACATCATTCATTGAGACTCTGCGGGAGCAAATATTCAAGCCATCATTGTCCACAATCATTCCCGAGAATTCAAAgtagctaataacttcttttgttagtttaaaagattacataaattttaatttgtctgcatgtttggttacaatccaagttactttaacagataattgcactttttag

Basic information

species Glycine max
transcript GLYMA04G37370.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 6
ACTCCAATACATCATTCATTGAGACTCTGCGGGAGCAAATATTCAAGCCATCATTGTCCACAATCATTCCCGAGAATTCAAAgtagctaataacttcttttgt------tagtttaaaagattacataaattttaatttgtctgcatgtttggttacaatccaagttactttaacagataattgcactttttag----------------------------------------------------------------------------------
   | |  |||   ||||||||||| || || |||   || || | |||  | |||||||| ||||| |||||||||||||||||| ||||| |||  ||| |      |  |||      | | ||     || ||   | |   | |     ||   | ||   ||  || |   ||| ||   | |||                                                                                     
GTCCTAGCACA---TTCATTGAGACACTTCGAGAGAGGATGTTTAGGCCTGCTTTGTCCACGATCATCCCCGAGAATTCAAAgtaggtaatatctttatttatatttattcatttggtttttcatatggccatttatagcttttactatgaaactatgctacagaatatctttatttatatttattcatttggtttttcaaatggccctttgtatagctttcactatcaaactataatacaattactttcatttaacatatcatggaatctttcag