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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatttttatgtagaagttctttttttttttttgctatggttattgatatttgtacatttcttgactttgttaactgttttaataaccaaagcct...

Basic information

species Glycine max
transcript GLYMA04G37120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37120.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g42300.2 (Oryza sativa), 5'ss of exon 6
GTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatttttatgtagaagttctttttttttttttgctatggttattgatatttgtacatttcttgactttgttaactgttttaataaccaaagcct----
||  || | ||||| ||||||||||| ||||| ||||||||||  ||  | |||||| | |||||   |||| ||||||||||  | |||||||| |||||||||||| |   |  |  || |||||  |     | | ||   ||  ||    ||||    |||  | |  |||| |  ||  |  ||| |||  |  |    
GTGTTGCTTGATGTCAAACCATGGGACGATGAGACTGACATGACCAAATTGGAAGAAGCTGTGAGGAATGTTAAGATGGAAGGCCTCCTTTGGGGCGCATgtatgttact---acattaaatttcttcctacgaatgtact---gtcttttgcttttgctagtttggttagattgtgacatgaatatata-ccactgtttgcag

upper sequence: GLYMA04G37120.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g29260.1 (Oryza sativa), 5'ss of exon 6
GTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatttttatgtagaagttctttttttttttttgctatggttattgatatttgtacatttcttgactttgttaactgttttaataaccaaagcct---------
|||||| | |||||||| ||||||||||| ||||| ||||||   |||||||| ||| | |||||   |||  ||||||| ||  |||| |||||||||||||||| | | |  | |  || || | || |  |  |   |   || | | |||| ||    | |  ||  ||  |      ||||   |   |||  |          
GTTCTGCTAGATGTAAAGCCATGGGATGACGAAACAGACATGGCAAAGCTTGAGGAAGCTGTGAGGAATGTGAAGATGGAGGGCCTGCTCTGGGGTGCATgtatgtgactctattcttcaa-ttttattctgctaataaatccagt-actaatatgtgc---tcttatggtttaatagttcattttctaacataaaatcatttttgcag

upper sequence: GLYMA04G37120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 5'ss of exon 6
GTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatttttatgtagaagttctttttttttttttgctatggtt-attgatatttgtacatttcttgactttgttaac---tgttttaataaccaaagcct
||| |||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| ||||  |     || | |||||||||||| | ||||| ||||||| ||  ||| |      |  || || |   ||   |||     |  |||  |       ||  |  |  | ||   ||     ||||| ||  ||       
GTTTTGTTGGATGTGAAACCATGGGATGATGAGACTGACATGAAAAAGCTTGAGGAAGCAGTACGTAGCATTAAAATGGAAGGGTTGTTATGGGGAGCATgtacgtcttttctcctctcatcttattgtagattacatgcagcactccatttcttgcaacgcaaattatttccttaaaaatacacgttttgattgccttg----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295190|gb|FG986909.1|FG986909
EST:     GAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTT
genomic: GAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGG-TGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTT
EST: gi|6848971|gb|AW351261.1|AW351261
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|4286063|gb|AI440993.1|AI440993
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTTGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|11411521|gb|BF423532.1|BF423532
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGAGGTGCAT                         GCAAACTTGTTCCTGGTGGATACGGTATTAAGAAGCTGCAGAAT-ATGCTG
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCA-AATTATGCTT
EST: gi|58015143|gb|CX701885.1|CX701885
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|208105688|gb|GD904713.1|GD904713
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATT
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATT
EST: gi|18038851|gb|BM307145.1|BM307145
EST:     GAAGAATCAGTGAGATCTGTTCAGATGGGAAGG-TTGCTTTGGGGTGCAT                         CCAAACTTGTTCCT
genomic: GAAGAATCAGTGAGATCTGTTCAGATGG-AAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCT
EST: gi|254314709|gb|GR829702.1|GR829702
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|151396946|gb|EV266819.1|EV266819
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|254314708|gb|GR829701.1|GR829701
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAA-CTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|26058029|gb|CA800943.1|CA800943
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|193394540|gb|FK360757.1|FK360757
EST:     TGAAG-ATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|31307073|gb|CD392276.1|CD392276
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|9258998|gb|BE347145.1|BE347145
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTTGGGTGCAT                         CCAAACTTGTTCCTGGTGGGATCCG-TATTAAGAA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGG-ATACGGTATTAAGAA
EST: gi|31462978|gb|CD405006.1|CD405006
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCCAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCCAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|9564337|gb|BE473846.1|BE473846
EST:     TGAAGAATCAGTGAGATCTGGTCAGATGGAAGGGGTGCTTTGGCGTGCAT                         T
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccag-
EST: gi|9564337|gb|BE473846.1|BE473846
EST:     TGAAGAATCAGTGAGATCTGGTCAGATGGAAGGGGTGCTTTGGCGTGCAT                         T
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccag-
EST: gi|11411502|gb|BF423513.1|BF423513
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGATACTGCATATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|151409150|gb|EV278958.1|EV278958
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|19346370|gb|BM891250.1|BM891250
EST:     GTGAGATCTGTTCAGATGGAA-GGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: GTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|22523638|gb|BU082449.1|BU082449
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|42722502|gb|CK768401.1|CK768401
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|192309529|gb|FK000191.1|FK000191
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTCGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|151402916|gb|EV272729.1|EV272729
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|192329978|gb|FK021564.1|FK021564
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|193635492|gb|FK584831.1|FK584831
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|151396767|gb|EV266640.1|EV266640
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTCGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|254318263|gb|GR832431.1|GR832431
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|18692713|gb|BM521561.1|BM521561
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTT
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTT
EST: gi|254318262|gb|GR832430.1|GR832430
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGGTATTAAGAAACTGCAAATTATGCTT
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGG-TATTAAGAAACTGCAAATTATGCTT
EST: gi|192329979|gb|FK021565.1|FK021565
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|6964003|gb|AW432696.1|AW432696
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|58017474|gb|CX704216.1|CX704216
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|31561132|gb|CD486970.1|CD486970
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGT
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGT
EST: gi|151401263|gb|EV271077.1|EV271077
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGA
EST: gi|31463360|gb|CD405388.1|CD405388
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|8401588|gb|BE057152.1|BE057152
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|15813987|gb|BI786262.1|BI786262
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|11687926|gb|BF595602.1|BF595602
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|4436972|gb|AI522837.1|AI522837
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|192300142|gb|FG989264.1|FG989264
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
EST: gi|7692495|gb|AW760600.1|AW760600
EST:     TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCAT                         CCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA
genomic: TGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatt ... tgtgccccagCCAAACTTGTTCCTGTTGGATACGGTATTAAGAAACTGCAAATTATGCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGTTGGATGTAAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATgtatgttatttttatgtagaagttctttttttttttttgctatggttattgatatttgtacatttcttgactttgttaactgttttaataaccaaagcct

- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG