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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag

Basic information

species Glycine max
transcript GLYMA04G37050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagttaaa--acttgtatggcttcttgtatag----------
|||||||| |||||||| || |||||||||||||| ||||| || || || |||||||||||||| || || ||||| || || || || |      |    | |  | | ||| | |  | | |  ||  |        | |  ||| |  ||   | |  |   ||| |             
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagtttggaccaccatatacct

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgca--caaatgtttttaatttgtatc---aattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag
||||||||||| || || |||| ||| |||||||| ||||| ||||| || ||||||||||| || || || || || || || |||||    ||| |    |    |   ||    | ||   | | | | || ||     |   |   |||     |  ||    | ||||||||
TGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatag

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 18
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagcctt--ttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagt-taaaacttgta--tggct--tcttgtatag------------------------------------------------
||| ||||||| || ||||| |  || |||||||||||||| ||||| |||||||||||||| || || || ||||| ||||| |||||   |  | |        |   | |    | || ||| || || |    |  |   ||    || |  ||||  | |    ||  ||||                                                  
TGGCTTGGTGAAGGAGAAAAATTCGTGAAAGCTGTTTTTTCACTGGCAAGTAAAATTGCTCCAAGTGTAATTTTTGTGGACGAGgtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggacaccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttag

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 22
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatc--agttaaaac-ttgtatggcttcttgtatag---
|||||||| ||||| ||||| ||||| |||||||||||||| || || || |||||| ||||||| || || || || || || || ||   ||| |  ||  ||   | ||        ||    ||    || ||||| |   || | |  | |||  | |  || ||||||    
TGGTTTGGAGAGGGAGAAAAATATGTGAAAGCTGTTTTTTCACTTGCAAGCAAAATTTCTCCTAGTGTTATTTTCGTGGATGAGgttagtgattttcttaacggtcactgat-------gatatgcctatgacataataagttgtagcttactcattgatttgtgtcctgtatattag

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgttttt-aatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag
||||||||||||||||| ||||||||||||||||| |||||  |||| ||||||||  | |||||||| || ||||| ||||| ||||   || ||   || |  ||   ||||||  |  | |||      |||     | ||  ||| ||  | |||  ||  || | |||
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatca----gagcactgacagtc--ttacaatgt-tattactgttt-tgtag

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 22
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag
|||||| |||||||||| || |||||||||||||| |||||  |||||||||||||| | || ||| | || ||| | ||||| ||||   ||   ||       ||       | |||         |    |  ||  |     | | | |  | |    |||||||   
TGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGgtaa---ttcctcatggtcaattcgtgggcgaatcttgcttgtagtcagagcattgactgtcttacaatattttactgtcttgtag--

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag
|||||||| ||||| || |||||||| || || ||||| || || || ||||||||||||||||| ||  ||||||| || ||||| |||  ||   | || | |||||  ||| |||    |  | |||| |    |      | || |   | | |    ||||      
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagc--ttcatataactctttttg-tttatata---ttgtttgcttcctc-tctgcttgctatattctttgtttggtcttag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16283953|gb|BI945829.1|BI945829
EST:     TTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTT-ACGAA                         GTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGTGGAGCATGAGGCCATG
genomic: TTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttt ... tcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
EST: gi|10845533|gb|BF071131.1|BF071131
EST:     TTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAA                         GTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
genomic: TTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttt ... tcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG