Sequence
atgc intronic sequence ATGC exonic sequenceATGATGGTGGTGGAATGGATCCGGATGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTgtacggattgtgacttgtttttctgctatcatattggtattccctttcatatttattttttaatttttcaatttggtgttctag
Basic information
species | Glycine max |
transcript | GLYMA04G35870.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g36840.3 (Oryza sativa), 5'ss of exon 5
ATGATGGTGGTGGAATGGATCCGGATGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTgtacggattgtgacttgtttttctgctatcatattggtattccctttc---atatttattttttaattt--ttcaatttggtgttctag
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ATGATGGAGGGGGAATGGATCCAGAGGCACTGAGACGCTGCATGAGCTTTGGATTTTCAGATAAGCAGTCCGATGCTTTAATCGGGCAATgtatagcct-tgtgtactttttctgcagttctttggaaaattgatatctagaacccttcttttggatttactgctgtttgttgtatcag
upper sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G19100.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGATGGTGGTGGAATGGATCCGGATGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTgtacggat-tgtgacttgtttttctg----ctatcatattggtattccctttcatatttattttttaatttttcaatttggtgttctag------------------------------------------------------------------------
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ATGATGGTGGTGGGATGGATCCTCAGGCAATGCGGCATTGTATGGGTTTTGGATTCTCAGATAAAAAGTCGGATTCAGCCATTGGAAGATgtatgaatctttcgcttcattctctaaactctttatctttagttatgattctgcaacacatatctctgattctca-ttttgcattacataccattagttatgattttgaaactcagatctttaattatgattctgcatctcaccttcattattatctttag
upper sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g08750.t01 (Vitis vinifera), 5'ss of exon 5
ATGATGGTGGTGGAATGGATCCGGATGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTgtacggattgtgacttgtttttctgctatcatattggtattccctttcatatttattttttaatttttcaatttggtgttctag
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ATGACGGTGGTGGAATGGGCCCAGAAGCAATGCGGTGCTGTATGAGTTTTGGATTCTCAGATAAGAAATCAAAATCGGCAATTGGACAATgtaaggatgtta---tgtttttcattctgcat-tttttttctccttccatatgagttggctgatgtgtagcattacag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16104880|gb|BI892620.1|BI892620EST: CATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGT ATGGAAATGGCTTCAAGACCAGTAGTATGAGGCTTGGTGCAGATGTCATAG
genomic: CATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTgtacggattg ... ggtgttctagATGGAAATGGCTTCAAGACCAGTAGTATGAGGCTTGGTGCAGATGTCATAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATGGTGGTGGAATGGATCCGGATGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTgtacggattgtgacttgtttttctgctatcatattggtattccctttcatatttattttttaatttttcaatttggtgttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT