1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTCTTCTCTATCATAACAGTAATGTCCTTCTTCTTGTTAGCACCTGTGGCTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatcttgatggttaaaagaaataggattgtcattatcatagctgcaacagtgcaatcaaaatatataattttcttgagttttctgatgttatctgcatcttctttcttgacag
species | Glycine max |
transcript | GLYMA04G35730.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCT GGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGTEST: gi|10256147|gb|BE823913.1|BE823913
genomic: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatct ... ttcttgacagGGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGT
EST: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCT GGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGTEST: gi|10846064|gb|BF069053.1|BF069053
genomic: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatct ... ttcttgacagGGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGT
EST: CTATCTACATGGAGGGAGTCAAATTTACTCCTGCTTACTTGCAATCTGCT GGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGTEST: gi|192301535|gb|FG998443.1|FG998443
genomic: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatct ... ttcttgacagGGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGT
EST: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCT GGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGTEST: gi|58016526|gb|CX703268.1|CX703268
genomic: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatct ... ttcttgacagGGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGT
EST: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCT GGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGT
genomic: CTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatct ... ttcttgacagGGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCACTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTTCTCTATCATAACAGTAATGTCCTTCTTCTTGTTAGCACCTGTGGCTATCTTCATGGAGGGTGTCAAATTTACTCCTGCTTACTTGCAATCTGCTgtgagtatcttgatggttaaaagaaataggattgtcattatcatagctgcaacagtgcaatcaaaatatataattttcttgagttttctgatgttatctgcatcttctttcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG