1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAATTGGACCAAGAGATTAAGTCTTGGCTTGCATTTGCAGCACAAAAAGTTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaacccattgaaggctttttgtcacaaacttgatgtcattctgttttttattgcctgtccttttgcag
species | Glycine max |
transcript | GLYMA04G30350.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAEST: gi|151395301|gb|EV265172.1|EV265172
genomic: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAEST: gi|207730170|gb|GD705014.1|GD705014
genomic: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
EST: GTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAEST: gi|208080756|gb|GD873290.1|GD873290
genomic: GTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
EST: CAAGGCATTGTTCGTTGGACAGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAEST: gi|14990789|gb|BI316462.1|BI316462
genomic: CAAGGCATTG-TC--TGGACAGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAEST: gi|208150386|gb|GD946959.1|GD946959
genomic: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
EST: AGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAEST: gi|208059894|gb|GD857406.1|GD857406
genomic: AGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGT-AATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAG GTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
genomic: TTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaa ... ccttttgcagGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATTGGACCAAGAGATTAAGTCTTGGCTTGCATTTGCAGCACAAAAAGTTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGgtacatcaaacccattgaaggctttttgtcacaaacttgatgtcattctgttttttattgcctgtccttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG