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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGCTTTACGTGCATTTAAGCGTCGAGTGGCATATGCAAATGCAAATTATGATCgtatcctcttttatatttaggttttaaataataattcatctttgaccatataagcttaagcctaatgaatctagtcaaaccacatatgtcaaagttagca...

Basic information

species Glycine max
transcript GLYMA04G20400.2
intron # 6
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 6
GTCAGCTTTACGTGCATTTAAGCGTCGAGTGGCATATGCAAATGCAAATTATGATCgtatcctctt----ttatatttaggttttaaataataattcatctttgaccatataagcttaagcctaatgaatctagtcaaaccacatatgtcaaagttagca--
 |||||||| ||| | || ||||| || || || |||||||||||||| |||||||||||||| ||    ||| |  || ||||||||   | | |  |  || |  ||  ||   ||   |   |  || || |  |          |||  | ||  |  
ATCAGCTTTGCGTTCTTTCAAGCGCCGTGTTGCGTATGCAAATGCAAACTATGATCgtatccttttctggttaaaaataagttttaaactctcaat--ttcttaagtattgaactgtattacccttctatataatttattgtttatcttcactgatattaag