1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTTTACGATAAAGTCACATCAGCTGGAGGCGTTGAATTTGAGGATGGAATTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAGgttggtttatttgactaaaaatggaaattccctaacgttaaataaatttgaaatgatgacaaaaacttcccccctcccaatcgtcattacttaaaaagtt...
species | Glycine max |
transcript | GLYMA04G16670.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATTAGAGCTGCTGCAAAG AACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTEST: gi|192323163|gb|FK017389.1|FK017389
genomic: TGATTAGAGCTGCTGCAAAGgttggtttat ... atttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
EST: TTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAG AACCACAAAGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTTEST: gi|151410033|gb|EV279841.1|EV279841
genomic: TTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAGgttggtttat ... atttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
EST: TTGAAAATATCGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAG AACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
genomic: TTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAGgttggtttat ... atttgagtagAACCACAAGGATGTTTTGGTAGTGGTTGATACAGAAGACTACCCTGCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTACGATAAAGTCACATCAGCTGGAGGCGTTGAATTTGAGGATGGAATTGAAAATATTGACATCGGTGGTCCCGCCATGATTAGAGCTGCTGCAAAGgttggtttatttgactaaaaatggaaattccctaacgttaaataaatttgaaatgatgacaaaaacttcccccctcccaatcgtcattacttaaaaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc