Sequence
atgc intronic sequence ATGC exonic sequenceATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGgtaatacatatttatgcttccttgtttatttgacatgaatgttcctttgcattgaatatatacagaacttgtttcggctatgagtataatgagtcactgg...
Basic information
species | Glycine max |
transcript | GLYMA04G12490.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G12490.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G043862_T01 (Zea mays), 5'ss of exon 6
ATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGgtaatacatatttatgcttccttgtttatttgacatgaatgttcctttgcattgaatata---tacagaacttgtttcggctatgagtataatgagtcactgg
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ATACCGAGTCTGCTAGGGCCTCAAGAAAACAATACAAGGAGACGCTGTACTCTGTCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCGATCAGgtattacattatt-tggttaccggttaaaccaacatgattcctttttactacctcatgttttctatttaatcagttgttgctcctttcttgaagcaccttt--
upper sequence: GLYMA04G12490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0015g01740.t01 (Vitis vinifera), 5'ss of exon 6
ATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGgtaatacatatttatgcttccttgtttatttgacatgaatgttcctttgcattgaatatatacagaacttgtttcggctatgagtataatgagtcactgg-----------
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ATAATGAATCTGCTAAAGCATCTCGAAGGCAGCTAAAGGAAACCATTCATTCAGTCTTGTTTGATATGAACGTTCCTGCTGTTTGTGCCATCAACCAGgtgg-----attt---ttttcttgattatttga-at-aattccacttctcaaggagaaaaagcaaaagaaaaca-aatgaagggttttatggtttgatgattttcaagatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17400877|gb|BM177659.1|BM177659EST: ACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAG GCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAAT
genomic: ACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGgtaatacata ... taaaatgtagGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGgtaatacatatttatgcttccttgtttatttgacatgaatgttcctttgcattgaatatatacagaacttgtttcggctatgagtataatgagtcactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT