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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAAATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTTTAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactgttgactagatcggttctatctttattgtatgttataaccttggttctgacttgcatcataattattttgttatctcttgtaacttattctcct...

Basic information

species Glycine max
transcript GLYMA04G11550.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 6
lower sequence: AC197672.3_FGT002 (Zea mays), 5'ss of exon 8
GGCTAAATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTTTAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactgttgactagatcggttctatctttattgtatgttataaccttggttctgacttgcatcataattattttgttatctct-tgtaacttattctcct
 |||||  ||||   ||||||||| ||||||||||||||||||||||  || ||||| ||||| || ||||| ||| | ||| | || || || ||||||||   || |   |  |          | | ||||  |   |||| | || | | || |  | ||| |||| ||   |||||||  || |            
TGCTAAGGCTGTGGGTTATGTTGGTGCGGCTACTGTTGAGTATCTTTACAGCATGGAGACTGGAGAATACTATTTTCTGGAGCTTAATCCCCGACTACAGgt--ttgctacttgaa----------catcattgacta--ataaacctgctgcggaatc-cttcaaaatt-ttaaattatctccatgcag-----------

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 8
GGCTAAATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTTTAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactgttgactaga-tcggttctatctttattgtatgttataaccttggttctgacttgcatcataattattttgttatctcttgtaacttattctcct
 |||||  ||||   ||||||||| || |||||||||||||||||||  || ||||||||||| || ||||| ||| | ||  | || || || ||||||||   || |   |  | ||  ||   |  ||| | | |     ||      | |    ||  || ||  | ||   |                        
TGCTAAGGCTGTGGGTTATGTTGGTGCTGCTACTGTTGAGTATCTTTACAGCATGGAAACTGGAGACTACTATTTTCTGGAACTTAATCCCCGACTACAGgt--ttgctacttgaactccattgactagttaatatgtaggggaaatcctttacaattttaaattatcttcatgcag------------------------

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCTAAATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTTTAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactgttgac-tagatcggttctatctttattgtatgttataaccttggttctgacttgcatcataattattttgttatctcttgtaacttattctcct
 |||||   ||| || |||||||| || ||||||||||||||||| | ||||||||| ||||| ||||||||||| |||||| | ||||||||  |||||||  || |  |   | | |    ||| ||||  | |  |    ||    | || ||   |  |  ||      || | | ||                   
AGCTAAGAGTGTTAACTATGTTGGAGCTGCTACTGTTGAGTATCTCTATAGTATGGACACTGGGGAGTACTACTTCTTAGAGCTTAACCCTCGCTTACAGgtttctttccatacacaccatagctacctttccttttcgaatgaaa---gattttggtcttgaaaatcgaatgttcgatgtcag-----------------

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 7
GGCTAAATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTTTAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactgttgactagatcggttctatctttattgtatgttataaccttggttctgacttgcatcataattattttgttatctcttgtaacttattctcct
||||||   ||| || |||||||| || ||||||||||||||||| |  |||||||| ||||| ||||||||||| |||||| | ||||||||  |||||||   | || |       | || |  | ||    ||| ||  |     ||| | |||||| |   | | |   ||||| |  ||||    ||    ||  
GGCTAAGAGTGTTAACTATGTTGGAGCTGCTACTGTTGAGTATCTCTACAGTATGGACACTGGGGAGTACTACTTCTTAGAGCTTAACCCTCGCTTACAGgttggt-ttcatactgcagctttttgcgttgaaatatattgaa-----ggtccggacttgaaaattgaatgacttgtt-taacttgatgtttgaggtcag

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 7
GGCTAAATCTGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTTTAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGgtaactgttgactagatcggttctatctttattgtatgttataaccttggttctgacttgcatcataattattttgttatctcttg-taac-ttattctcct---
 || |||| ||| ||||||||||| || ||||||||||||||| | |  ||||||||||||||||||||||| ||  ||||| | || |||||  |||||||   || |   | |  |     ||| || |  | |  | |||| ||   || ||   |  || |     | | ||  | ||     ||   ||||  |  |   
AGCCAAATGTGTGAATTATGTTGGAGCAGCTACTGTTGAGTATTTGTACAGTATGGAAACTGGCGAGTACTATTTCCTAGAGCTCAATCCTCGATTACAGgtttgtgatacttggtaca----tattttaaaaggaaataataaactct-ttttgtgctatattacttggactctgggaccttgcaatagtgttatggttttgac