Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACTTGGGGTAATCACCCAAAGGTTTTCAACTTAGCAGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaattatttatcaagctgtgaagtgtttgttacttattgtatcatgatcaatttcatattcatcaagtttattttatttaatgttaccttctcgtttgttccttacag

Basic information

species Glycine max
transcript GLYMA04G08560.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412423|gb|EV282235.1|EV282235
EST:     CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAG                         GACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|192306580|gb|FG996242.1|FG996242
EST:     CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAG                         GACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|254321007|gb|GR827456.1|GR827456
EST:     CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAG                         GACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|17022645|gb|BM093679.1|BM093679
EST:     CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAG                         GACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|192334119|gb|FK026276.1|FK026276
EST:     CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAG                         GACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|17153142|gb|BM143075.1|BM143075
EST:     GCAACACGAGGGCTTGATTTTCAAG                         GCA-AACTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTA
genomic: GCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagG-ACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTA
EST: gi|17153235|gb|BM143168.1|BM143168
EST:     CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAG                         GACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGATTTTCAAGgttggaaatt ... ttccttacagGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC