Sequence
atgc intronic sequence ATGC exonic sequenceTAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGgttaaacttggcaatgatctgttttgtgcattgtataatagctaagaaatgagagtgcatgcattgacaaagttctgtctgttctttctag
Basic information
species | Glycine max |
transcript | GLYMA04G07870.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G07870.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G24850.1 (Arabidopsis thaliana), 5'ss of exon 6
TAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGgttaaacttggcaatgatctgttttgtgcattgtataatagctaagaaatgagagtgcatgcattgac---aaagttctgtctgttctttctag
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CAAAGAGACGAGGAACGGAATGTTAGGACCTGATTATTCGACGAAATTCTCTCCTTGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGgtaaactctttcaaaaccgtaattcgt-taccccaaaacatatagcagtctttcacttatgtgacaactgaaaaaatatttcag----------
upper sequence: GLYMA04G07870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g02670.t01 (Vitis vinifera), 5'ss of exon 6
TAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGgttaaacttggcaatgatctgttttgtgcatt-gtataatagc---------taagaaatgagagtgcatgcattgacaaagtt-ctgtctgttctttctag
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TAAAGCAACAAGGAATGGGATGTTGGGGGCTGATTACTCTACCAAATTCTCTCCATGGCTTGCTTCAGGAAGCCTCTCCCCCCGGTTCATATACCAAGAGgttcaaattt-tgatgatttccactattcttccgcataatcatgcaatttagttagaaatgagactaatcttggagccagggtttccttttgatcttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990988|gb|BI316661.1|BI316661EST: CCTCGTTTCATATATGAAGAG GTGAAGAGATATGAGAATGATAGACTAGCAAATAGTTCTACCTACTG
genomic: CCTCGTTTCATATATGAAGAGgttaaacttg ... ttctttctagGTGAAGAGATATGAGAATGATAGACTAGCAAATAGTTCTACCTACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGgttaaacttggcaatgatctgttttgtgcattgtataatagctaagaaatgagagtgcatgcattgacaaagttctgtctgttctttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA