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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgatagattgtatcaaatggcctatcagttgtttttttttcttggtaaaagaaagcatgcttgtttttctttttaatctaattgtgatttgaaagaatttttctattatgttatag

Basic information

species Glycine max
transcript GLYMA04G07030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 6
GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgatagattgtatcaaatggcctatcagttgtttttttttcttggtaaaagaaagcatgcttgtttttctttttaatctaattgtgatttgaaagaatttttctattatgttatag
| ||| ||||||||||||||||||||||||| |||||||| |||||||   |  | |||||   |   |  | | ||      | |||||| ||| |         | |  ||     |  || ||   |||    ||| | | |       |||  |   ||| ||
GAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATGgtattattct-gattgc-ccttttttcttctcgaacactgttttttattgct---------cttaatttcaacttcttatatcttaa----gatcttata---cccctcttctggattacag

upper sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 6
GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgatagattgtatcaaatggcctatcag--ttgtttttttttcttggtaaaagaaagcatgcttgtttttctttttaatctaattgtgatttgaaagaatttttctattatgttatag
| ||| |||||||||| |||||||||||||| |||||||| |||||||   |  | |||||       |      | |    | ||||  || ||    |    | | ||  ||| || |   ||  |||||   | |    ||   | ||||                
GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATGgtatcatttt-gattgcccttttttcttcttgaacactattttgattgctcttaacttcagatcaaacttcttatgtcttaaaatct---tatatcctgtttggatttcag-------------

upper sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G32272.2 (Arabidopsis thaliana), 5'ss of exon 7
GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgatagattgtatcaaatggcctatcagttgtttttttttcttggtaaaagaaagcatgcttgtttttctttttaatctaattgtgatttgaaagaatttttctattatgttatag
| ||| | |||||| | ||||||||||||||||||||||  ||||||||    ||| | |  | || ||  |   | | |||    |                || ||  |  |  || ||||  ||| |   || |||||  ||  ||                  
GTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGgtaat---ataaacta-aacagataac---taaattgaccct----------------aaacactcaagacttgctttg-aatttg--tgagattttcaatgatag----------------

upper sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 6
GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgatagattgtatcaaatggc---ctatcagttgtt----tttttttcttggtaaaagaaagcat----gcttgtttttctttttaatct-------aattgtgatttgaaagaatttttctattatgttatag
| ||| ||||||||||||||||||||||||| |||||||||||||||||||| | | |||  | |   | |    |  | ||   |     || ||||||||| | ||  |   |     | || |||   |  |  | ||       || | | |||  |     ||||| | || | ||||||
GGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTAATGgtaagcttaaaaattccaactgcttgtattcctttagacatgctgattattttcttggcagaattacttaatggggtttatttgaatgctataccttttcagaaaatcttattacatcttttttttttctttttttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590190|gb|AW705948.1|AW705948
EST:     GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATG                         GTGTCATATGTGGGCCCTTTTTGCTTTTCTGGACATTAGTTCGGGGTGACT
genomic: GCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGgtaagctgat ... tatgttatagGTGTCATATGTGGGCCCTTTTTGCTTTTCTGGACATTAGTTCGGGGTGACT