Sequence
atgc intronic sequence ATGC exonic sequenceCTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAACAGTCCCCAAGAGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAGgtgagtttatggagatgataaattggtgatgtacttcatactttagaattggttattggcataagccaagaagttaaggcatatggtttgagcggaaaag...
Basic information
species | Glycine max |
transcript | GLYMA04G06420.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G06420.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G25100.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAACAGTCCCCAAGAGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAGgtgagtttatggagatgataaattggtgatgtacttcatactttagaattggttattggca--taagccaagaagttaaggcatatggtttgagcggaaaag-------
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CTGTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAAAATAAGAAAGAAATTATCTTCACATATGATGTTGACTTTCAGgcaagttcttgtt--tgactaatcagtttatcaccagatagttttgtcttagtgagatactattgtgttcctgttctcactgttttgatttttgcgctgatgtcttcag
upper sequence: GLYMA04G06420.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 6
CTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAACAGTCCCCAAGAGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAGgtgagtttatggagatgataaattggtgatgtacttcatactttagaattggttattggcataagccaagaagttaaggcatatggtttgagcggaaaag--
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CTGTGACCCCCATACAAAACGCACTGTTATTAATTCCAACTCTCCTCAAGAAGTTGAAGTGAACCAGGAAATTTTATTCACATATGATGTTGAGTTCCAGgtaggctgttggacat--caaactacaagtaaattatgttgactgcttacccctattgttagtggtatgagcatcattatatcatccatgggcacaaagaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193575245|gb|FK529362.1|FK529362EST: AGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAG GAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTAATGAAT
genomic: AGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAGgtgagtttat ... gtaccttcagGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTAATGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAACAGTCCCCAAGAGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAGgtgagtttatggagatgataaattggtgatgtacttcatactttagaattggttattggcataagccaagaagttaaggcatatggtttgagcggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA