1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGATGCCAGATACAAAAGTACAATTGATGCACTTAGGATGATTGTTCGCAATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctcaccttagccaaacttatgcaagcttagttttagattactatttcacatgcttgaactactgttaattcacttaattgctttgcctataaca...
species | Glycine max |
transcript | GLYMA04G05530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTEST: gi|192315154|gb|FK009978.1|FK009978
genomic: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctca ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCT
EST: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCT
genomic: ATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctca ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGCCAGATACAAAAGTACAATTGATGCACTTAGGATGATTGTTCGCAATCAAGGCTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctcaccttagccaaacttatgcaagcttagttttagattactatttcacatgcttgaactactgttaattcacttaattgctttgcctataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT