1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGgtagcgatataatcttcaatatattaatttaatttacgaagattactcaatgccttattttctttaggagcaagttgatattccagatgtagcttgctaattgttacagaacacagttttacttccaaaaagtcattttcaagttgaatttatgttttgtcctctgcag
species | Glycine max |
transcript | GLYMA04G04530.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAG CTTGTTAAACTCCCTCGTACTCCTAATGTGAAAAGGCATATTGAAAAATTAEST: gi|151411416|gb|EV281227.1|EV281227
genomic: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGgtagcgatat ... tcctctgcagCTTGTTAAACTCCCTCGTACTCCTAATGTGAAA-GGCATATTGAAAAATTA
EST: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAG CTTGTTAAACTCCCTCGTACTCCTAATGTGAAAEST: gi|8284036|gb|BE021595.1|BE021595
genomic: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGgtagcgatat ... tcctctgcagCTTGTTAAACTCCCTCGTACTCCTAATGTGAAA
EST: AAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATTCTCG-CAAG CTTGGTAAACTCCCTCGTACTCCTTATGTGEST: gi|192303058|gb|FG994176.1|FG994176
genomic: AAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCAT-CTCGGCAAGgtagcgatat ... tcctctgcagCTTGTTAAACTCCCTCGTACTCCTAATGTG
EST: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAG CTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATEST: gi|192303059|gb|FG994177.1|FG994177
genomic: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGgtagcgatat ... tcctctgcagCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTAT
EST: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAG CTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTAT
genomic: TAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGgtagcgatat ... tcctctgcagCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGgtagcgatataatcttcaatatattaatttaatttacgaagattactcaatgccttattttctttaggagcaagttgatattccagatgtagcttgctaattgttacagaacacagttttacttccaaaaagtcattttcaagttgaatttatgttttgtcctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA