1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACATCGTAAGAGTGAAATTCGTATCACTTCCAAAGGGAACATATGTTAAATTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTATgtgagttgtcagtgatcgtaatatattggatgaaaataagaaatagttattgaacatgataaatcaatattccttcaaaagcatatccttgttttcatgc...
species | Glycine max |
transcript | GLYMA04G00980.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTAT CTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTATEST: gi|151397776|gb|EV267649.1|EV267649
genomic: TTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTATgtgagttgtc ... tacattgcagCTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTAT
EST: TTACAGCCACACACAAAGGACTTTTT-GATATTTCCAATCCAAAAGCTAT CTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTATEST: gi|192302630|gb|FG994882.1|FG994882
genomic: TTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTATgtgagttgtc ... tacattgcagCTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTAT
EST: TTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTAT CTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTATEST: gi|12689044|gb|BG155389.1|BG155389
genomic: TTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTATgtgagttgtc ... tacattgcagCTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTAT
EST: CCAATCCAAAAGCTAT CTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTAT
genomic: CCAATCCAAAAGCTATgtgagttgtc ... tacattgcagCTTAGAGACCACTTTGAGAAAATTTTCCTGCTTGACTACTGGAGATACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATCGTAAGAGTGAAATTCGTATCACTTCCAAAGGGAACATATGTTAAATTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTATgtgagttgtcagtgatcgtaatatattggatgaaaataagaaatagttattgaacatgataaatcaatattccttcaaaagcatatccttgttttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaataa